Job Description P77338 Confidence 92.54% Date Thu Jan 5 12:28:00 GMT 2012 Rank 42 Aligned Residues 292 % Identity 12% Template c2ch7A_ PDB info PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima Resolution 2.5 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	L	Q	A	Q	L	D	S	L	N	K	Q	K	D	L	S	A	Q	D	K	L	V	Q	Q	D	L	T	D	T	L	A	T	L	D	K	I	D	R	I	K	E	E	T	V	Q	L	R	Q	K	V	A	E	A	P	E	K	M	R	Q	A	T	A	A	L	T	A	L	S	D	V	D	N	D	E	E	T	R	K	I
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		K	D	V	Q	T	E	T	F	S	V	A	E	.	.	S	I	E	E	I	S	K	A	N	E	E	I	T	N	Q	L	L	G	I	S	K	E	M	D	N	I	S	T	R	I	E	S	I	S	A	S	V	Q	E	T	T	A	G	S	E	E	I	S	S	A	T	K	N	I	A	D	S	A	Q	Q	A	A	S	F	A	D
Template Known Secondary structure														.	.
Template Predicted Secondary structure														.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190														.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	T	L	S	L	R	Q	L	E	T	R	V	A	Q	A	L	D	D	L	Q	N	A	Q	N	D	L	A	S	Y	N	S	Q	L	V	S	L	Q	T	Q	P	E	R	V	Q	N	A	M	Y	N	A	S	Q	Q	L	Q	Q	I	R	S	R	L	D	G	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	T	Q	L	A	K	E	A	G	D	A	L	K	K	V	I	E	V	T	R	M	I	S	N	S	A	K	D	V	E	R	V	V	E	S	F	Q	K	G	A	E	E	I	T	S	F	V	E	T	I	N	A	I	A	E	Q	T	N	L	L	A	L	N	A	A	I	E	A	A	R	A	G	E	A	G	R	G	F	A
Template Known Secondary structure																																									T	T																														T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	T	A	L	R	P	S	Q	K	V	L	M	Q	A	Q	Q	A	L	L	N	A	E	I	D	Q	Q	R	K	S	L	E	G	N	T	V	L	Q	D	T	L	Q	K	Q	R	D	Y	V	T	A	N	S	A	R	L	E	H	Q	L	Q	L	L	Q	E	A	V	N	S	K	R	L	T	L	T	E	K	T	A	Q	E
Query Conservation
Alig confidence																																																																													.	.
Template Conservation																																																																													.	.
Template Sequence		V	V	A	D	E	I	R	K	L	A	E	E	S	Q	Q	A	S	E	N	V	R	R	V	V	N	E	I	R	S	I	A	E	D	A	G	K	V	S	S	E	I	T	A	R	V	E	E	G	T	K	L	A	D	E	A	D	E	K	L	N	S	I	V	G	A	V	E	R	I	N	E	M	L	Q	N	.	.	I	A	A
Template Known Secondary structure																																		T	T																	T	T																								.	.
Template Predicted Secondary structure																																																																													.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.			.	.	460
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	P	D	E	A	A	R	I	Q	A	N	P	L	V	K	Q	E	L	E	I	N	Q	Q	L	S	Q	R	L	I	T	A	T	E	N	G	N	Q	L	M	Q	Q	N	I	K	V	K	N	W	L	E	R	A	L	Q	S	E	R	N	I	K	E	Q	I	A	V	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	E	E	Q	T	A	A	V	D	E	I	T	T	A	M	T	E	N	A	K	N	A	E	E	I	T	N	S	V	K	E	V	N	A	R	L	Q	E	I	S	A	S	T	E	E	V	T	S	R	V	Q	T	I	R	E	N	V	Q	M	L	K	E	I	V	A	R	Y	K
Template Known Secondary structure																																																												S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions