Job Description P77338 Confidence 31.14% Date Thu Jan 5 12:28:00 GMT 2012 Rank 178 Aligned Residues 267 % Identity 8% Template c1u4qB_ PDB info PDB header:structural protein Chain: B: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure of repeats 15, 16 and 17 of chicken brain2 alpha spectrin Resolution 2.50 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	D	T	L	A	T	L	D	K	I	D	R	I	K	E	E	T	V	Q	L	R	Q	K	V	A	E	A	P	E	K	M	R	Q	A	T	A	A	L	T	A	L	S	D	V	D	N	D	E	E	T	R	K	I	L	S	T	L	S	L	R	Q	L	E	T	R	V	A	Q	A	L	D	D	L	Q	N	A	Q	N	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	S	V	N	N	L	L	K	K	H	Q	L	L	E	A	D	I	S	A	H	E	D	R	L	K	D	L	N	S	Q	A	D	S	L	M	T	S	S	A	F	D	T	S	Q	V	K	D	K	R	E	T	I	N	G	R	F	Q	R	I	K	S	M	A	A	A	R	R	A	K	L	N	E	S	H	R	L	H	Q	F
Template Known Secondary structure																																						T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		1695	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.											.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	S	Y	N	S	Q	L	V	S	L	Q	T	Q	P	E	R	V	Q	.	.	.	.	.	.	.	.	N	A	M	Y	N	A	S	Q	Q	L	Q	Q	I	R	S	R	L	D	G	T	D	V	G	E	T	A	L	R	P	S	Q	K	V	.	.	.	.	.	.	.	.	.	.	L	M	Q	A	Q	Q	A	L	L	N
Query Conservation																					.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	D	M	D	D	E	E	S	W	I	K	E	K	K	L	L	V	S	S	E	D	Y	G	R	D	L	T	G	V	Q	N	L	R	K	K	H	K	R	L	E	A	E	L	A	A	H	E	P	A	I	Q	G	V	L	D	T	G	K	K	L	S	D	D	N	T	I	G	K	E	E	I	Q	Q	R	L	A	Q	F	V
Template Known Secondary structure																			T	T						S	S																																					T	T			S
Template Predicted Secondary structure
Template SS confidence
		1775	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	D	Q	Q	R	K	S	L	E	G	N	T	V	L	Q	D	T	L	Q	K	Q	R	D	Y	V	T	A	N	S	A	R	L	E	H	Q	L	Q	L	L	Q	E	A	V	N	S	K	R	L	T	L	T	E	K	T	A	Q	E	A	V	S	P	D	E	A	A	R	I	Q	A	N	P	L	V	K	Q	E	L	E
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		D	H	W	K	E	L	K	Q	L	A	A	A	R	G	Q	R	L	E	E	S	L	E	.	Y	Q	Q	F	V	A	N	V	E	E	E	E	A	W	I	N	E	K	M	T	L	V	A	S	E	D	Y	G	D	T	L	A	A	I	Q	G	L	L	K	K	H	E	A	F	E	T	D	F	T	V	H	K	D	R	V	N	D
Template Known Secondary structure																								.																						T	S						S	S
Template Predicted Secondary structure																								.
Template SS confidence
		1855	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.		.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	Q	Q	L	S	Q	R	L	I	T	A	T	E	N	G	N	Q	L	M	Q	Q	N	I	K	V	K	N	W	L	E	R	A	L	Q	S	E	R	N	I	K	E	Q	I	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	C	A	N	G	E	D	L	I	K	K	N	N	H	H	V	E	N	I	T	A	K	M	K	G	L	K	G	K	V	S	D	L	E	K	A	A	A	Q	R	K	A	K	L	D	E
Template Known Secondary structure												T	T		S	T					T
Template Predicted Secondary structure
Template SS confidence
		1934	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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