Job Description P77338 Confidence 22.81% Date Thu Jan 5 12:28:00 GMT 2012 Rank 235 Aligned Residues 205 % Identity 6% Template c1s35A_ PDB info PDB header:structural protein Chain: A: PDB Molecule:spectrin beta chain, erythrocyte; PDBTitle: crystal structure of repeats 8 and 9 of human erythroid2 spectrin Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		Q	L	E	T	R	V	A	Q	A	L	D	D	L	Q	N	A	Q	N	D	L	A	.	.	S	Y	N	S	Q	L	V	S	L	Q	T	Q	P	E	R	V	Q	N	A	M	Y	N	A	S	Q	Q	L	Q	Q	I	R	S	R	L	D	G	T	D	V	G	E	T	A	L	R	P	S	Q	K	V	L	M	Q	A	Q	Q	A
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		A	F	L	Q	D	L	D	D	F	Q	A	W	L	S	I	T	Q	K	A	V	A	S	E	D	M	P	E	S	L	P	E	A	E	Q	L	L	Q	Q	H	A	G	I	K	D	E	I	D	G	H	Q	D	S	Y	Q	R	V	K	E	S	G	E	K	V	I	Q	G	Q	T	D	P	E	Y	L	L	L	G	Q	R	L	E
Template Known Secondary structure																												S	S																																					T	T			S
Template Predicted Secondary structure
Template SS confidence
		1065	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	N	A	E	I	D	Q	Q	R	K	S	L	E	G	N	T	V	L	Q	D	T	L	Q	K	Q	R	D	Y	V	T	A	N	S	A	R	L	E	H	Q	L	Q	L	L	Q	E	A	V	N	S	K	R	L	T	L	T	E	K	T	A	Q	E	A	V	S	P	D	E	A	A	R	I	Q	A	N	P	L	V	K	Q
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		G	L	D	T	G	W	D	A	L	G	R	M	W	E	S	R	S	H	T	L	A	Q	C	.	L	G	F	Q	E	F	Q	K	D	A	K	Q	A	E	A	I	L	S	N	Q	E	Y	T	L	A	H	L	E	P	P	D	S	L	E	A	A	E	A	G	I	R	K	F	E	D	F	L	G	S	M	E	N	N	R	D	K
Template Known Secondary structure																									.																															S	S
Template Predicted Secondary structure																									.
Template SS confidence
		1145	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.		.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	E	I	N	Q	Q	L	S	Q	R	L	I	T	A	T	E	N	G	N	Q	L	M	Q	Q	N	I	K	V	K	N	W	L	E	R	A	L	Q	S	E	R	N	I	K	E	Q	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	S	P	V	D	S	G	N	K	L	V	A	E	G	N	L	Y	S	D	K	I	K	E	K	V	Q	L	I	E	D	R	H	R	K	N	N	E	K	A	Q	E	A	S	V	L	L	R
Template Known Secondary structure															T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		1224	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions