Job Description P77338 Confidence 96.87% Date Thu Jan 5 12:28:00 GMT 2012 Rank 21 Aligned Residues 370 % Identity 8% Template c1hciB_ PDB info PDB header:triple-helix coiled coil Chain: B: PDB Molecule:alpha-actinin 2; PDBTitle: crystal structure of the rod domain of alpha-actinin Resolution 2.8 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		L	R	Q	K	V	A	E	A	P	E	K	M	R	Q	A	T	A	A	L	T	A	L	S	D	V	D	N	D	E	E	T	R	K	I	L	S	T	L	S	L	R	Q	L	E	T	R	V	A	Q	A	L	D	D	L	Q	N	A	Q	N	.	.	.	D	L	A	S	Y	N	S	Q	L	V	S	L	Q	T	Q	P	E	R
Query Conservation																																																													.	.	.
Alig confidence																																																													.	.	.
Template Conservation
Template Sequence		I	A	G	A	W	Q	R	L	E	Q	A	E	K	G	Y	E	E	W	L	L	N	E	I	R	R	L	E	R	L	E	H	L	A	E	K	F	R	Q	K	A	S	T	H	E	T	W	A	Y	G	K	E	Q	I	L	L	Q	K	D	Y	E	S	A	S	L	T	E	V	R	A	L	L	R	K	H	E	A	F	E	S	D
Template Known Secondary structure														T	T																																		T	T									G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	N	A	M	Y	N	A	S	Q	Q	L	Q	Q	I	R	S	R	L	D	G	T	D	V	G	E	T	A	L	R	P	S	Q	K	V	L	M	Q	A	Q	Q	A	L	L	N	A	E	I	D	Q	Q	R	K	S	L	E	G	N	T	V	L	Q	D	T	L	Q	K	Q	R	D	Y	V	T	A	N	S	A	R	L	E
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		L	A	A	H	Q	D	R	V	E	Q	I	A	A	I	A	Q	E	L	N	E	L	D	Y	H	D	A	V	N	V	.	N	D	R	C	Q	K	I	C	D	Q	W	D	R	L	G	T	L	T	Q	K	R	R	E	A	L	E	R	M	E	K	L	L	E	T	I	D	Q	L	H	L	E	F	A	K	R	A	A	P	F	N
Template Known Secondary structure																						T	T		T	T					.
Template Predicted Secondary structure																															.
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	L	Q	L	L	Q	E	A	V	N	S	K	R	L	T	L	T	E	K	T	A	Q	E	A	V	S	P	D	E	A	A	R	I	Q	A	N	P	L	V	K	Q	E	L	E	I	N	Q	Q	L	S	Q	R	L	I	T	A	T	E	N	G	N	Q	L	M	Q	Q	N	I	K	V	K	N	W	L	E	R	A	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	W	M	E	G	A	M	E	D	L	Q	D	M	F	I	V	H	S	I	E	E	I	Q	S	L	I	T	A	H	E	Q	F	K	A	T	L	P	E	A	D	G	E	R	Q	S	I	M	A	I	Q	N	E	V	E	K	V	I	Q	S	Y	N	I	R	I	S	S	S	N	P	Y	S	T	V	T	M	D	E	L	R	T
Template Known Secondary structure											T	T						S	S																																									T	T	T			S		S			T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	R	N	I	K	E	Q	I	A	V	L	K	G	S	L	L	L	S	R	I	L	Y	Q	Q	Q	Q	T	L	P	S	A	D	E	L	E	N	M	T	N	R	I	A	D	L	R	L	E	Q	F	E	V	N	Q	Q	R	D	A	L	F	Q	S	D	A	F	V	N	K	L	E	E	G	H	T	N	E	V	N	S	E
Query Conservation
Alig confidence																															.																																																.
Template Conservation																															.																																																.
Template Sequence		K	W	D	K	V	K	Q	L	V	P	I	R	D	Q	S	L	Q	E	E	L	A	R	Q	H	A	N	E	R	L	.	R	R	Q	F	A	A	Q	A	N	A	I	G	P	W	I	Q	N	K	M	E	E	I	A	R	S	S	I	Q	I	T	G	A	L	E	D	Q	M	N	Q	L	K	Q	Y	E	H	N	I	.	I	N
Template Known Secondary structure																															.																								S		S		T	T	T	T	S	T															.
Template Predicted Secondary structure																															.																																																.
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.		.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.		.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	D	A	L	L	Q	V	V	D	M	R	R	E	L	L	D	Q	L	N	K	Q	L	G	N	Q	L	M	M	A	I	N	L	Q	I	N	Q	Q	Q	L	M	S	V	S	K	N	L	K	S	I	L	T	Q	Q	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	K	N	N	I	D	K	L	E	G	D	H	Q	L	I	Q	E	A	L	V	F	D	N	K	H	T	N	Y	T	M	E	H	I	R	V	G	W	E	L	L	L	T	T	I	A	R	T	I	N	E	V	E	T	Q	I	L
Template Known Secondary structure																			T	T					T	T		S																												T	T
Template Predicted Secondary structure
Template SS confidence
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions