Job Description P77338 Confidence 99.01% Date Thu Jan 5 12:28:00 GMT 2012 Rank 5 Aligned Residues 491 % Identity 14% Template c1ciiA_ PDB info PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Resolution 3.00 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																				.																																																		.
Query SS confidence																				.																																																		.
Query Sequence		G	D	L	P	T	K	A	D	L	Q	A	Q	L	D	S	L	N	K	.	Q	K	D	L	S	A	Q	D	K	L	V	Q	Q	D	L	T	D	T	L	A	T	L	D	K	I	D	R	I	K	E	E	T	V	Q	L	R	Q	K	V	A	E	A	P	E	K	M	R	Q	A	.	T	A	A	L	T	A	L	S	D	V	D
Query Conservation																				.																																																		.
Alig confidence																				.																																																		.
Template Conservation
Template Sequence		D	D	S	P	T	R	S	D	I	E	K	R	D	K	E	I	T	A	Y	K	N	T	L	S	A	Q	Q	K	E	N	E	N	K	R	T	E	A	G	K	R	L	S	A	A	I	A	A	R	E	K	D	E	N	T	L	K	T	L	R	A	G	N	A	D	A	A	D	I	T	R	Q	E	F	R	L	L	Q	A	E	L
Template Known Secondary structure																																																														T	T
Template Predicted Secondary structure
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		N	D	E	E	T	R	K	I	L	S	T	L	S	L	R	Q	L	E	T	R	V	A	Q	A	L	D	D	L	Q	N	.	.	.	A	Q	N	D	L	A	S	Y	N	S	Q	L	V	S	L	Q	T	Q	P	E	R	V	Q	N	A	M	Y	N	A	S	Q	Q	L	Q	Q	I	R	S	R	L	D	G	T	D	V	G	E
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		R	E	Y	G	F	R	T	E	I	A	G	Y	D	A	L	R	L	H	T	E	S	R	M	L	F	A	D	A	D	S	L	R	I	S	P	R	E	A	R	S	L	I	E	Q	A	E	K	R	Q	K	D	A	Q	N	A	D	K	K	A	A	D	M	L	A	E	Y	E	R	R	K	G	I	L	D	T	R	L	S	E	L
Template Known Secondary structure																													T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	L	R	P	S	Q	K	V	L	M	Q	A	Q	Q	A	L	L	N	A	E	I	D	Q	Q	R	K	S	L	E	G	N	T	V	L	Q	D	T	L	Q	K	Q	R	D	Y	V	T	A	N	S	A	R	L	E	H	Q	L	Q	L	L	Q	E	A	V	N	S	K	R	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	N	G	G	A	A	L	A	V	L	D	A	Q	Q	A	R	L	L	G	Q	Q	T	R	N	D	R	A	I	S	E	A	R	N	K	L	S	S	V	T	E	S	L	N	T	A	R	N	A	L	T	R	A	E	Q	Q	L	T	Q	Q	K	N	T	P	D	G	K	T	I	V	S	P	E	K	F	P	G	R	S	S
Template Known Secondary structure																																																															S	S									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
																																		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	L	T	E	K	T	A	Q	E	A	V	S	P	D	E	A	A	R	I	Q	A	N	P	L	V	K	Q	E	L	E	I	N	Q	Q	L	S	Q	R	L	I	T	A	T	E	N	G	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	N	D	S	I	V	V	S	G	D	P	R	F	A	G	T	I	K	I	T	T	S	A	V	I	D	N	R	A	N	L	N	Y	L	L	S	H	S	G	L	D	Y	K	R	N	I	L	N	D	R	N	P	V	V	T	E	D	V	E	G	D	K	K	I	Y	N	A	E	V	A	E	W	D	K	L	R	Q	R	L	L
Template Known Secondary structure										S		T	T	T		S																					T	S									T	S					S			S	S
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	M	Q	Q	N	I	K	V	K	N	W	L	E	R	A	L	Q	S	E	R	N	I	K	E	Q	I	A	V	L	K	G	S	L	L	L	S	R	I	L	Y	Q	Q	Q	Q	T	L	P	S	A	D	E	L	E	N	M	T	N	R	I	A	D	L	R	L	E	Q	F	E	V	N	Q	Q	R	D	A	L	F	Q	S
Query Conservation
Alig confidence																																																.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		D	A	R	N	K	I	T	S	A	E	S	A	V	N	S	A	R	N	N	L	S	A	R	T	N	E	Q	K	H	A	N	D	A	L	N	A	L	L	K	E	K	E	N	I	R	N	.	.	.	.	.	Q	L	S	G	I	N	Q	K	I	A	E	E	K	R	K	Q	D	E	L	K	A	T	K	D	A	I	N	F	T
Template Known Secondary structure																																																.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.						.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.												.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	F	V	N	K	L	E	E	G	H	T	N	E	V	N	S	E	V	H	D	A	L	L	Q	V	V	D	M	R	R	E	L	L	D	Q	L	N	K	Q	L	G	N	Q	L	M	M	A	I	N	L	Q	I	N	Q	Q	Q	.	.	.	.	.	.	.	.	.	.	.	L	M	S	V	S	K	N	L	K	S	I	L
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	F	L	K	S	V	S	E	K	Y	G	A	K	A	E	Q	L	A	R	E	M	A	G	Q	A	K	G	K	K	I	R	N	V	E	E	A	L	K	T	Y	E	K	Y	R	A	D	I	N	K	K	I	N	A	K	D	R	A	A	I	A	A	A	L	E	S	V	K	L	S	D	I	S	S	N	L	N	R	F	S
Template Known Secondary structure														T												T	T	T	T		B														T					T	T	S	S		S												T
Template Predicted Secondary structure
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	Q	I	F	W	V	N	S	N	R	P	M	D	W	D	W	I	K	A	F	P	Q	S	L	K	D	E	F	K	S	M	K	I	T	V	N	W	Q	K	A	W	P	A	V	F	I	A	F	L	A	G	L	P	L	L	L	I	A	G	L	I	H	W	R	L	G	W	L	K	A	Y	Q	Q	K	L	A	S	A	V
Query Conservation
Alig confidence			.											.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.											.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	.	G	L	G	Y	A	G	K	F	T	S	.	.	.	.	.	L	A	D	W	I	T	E	F	G	K	A	V	R	T	E	N	W	R	P	L	F	V	K	T	E	T	I	I	A	G	N	A	A	T	A	L	V	A	L	V	F	S	I	L	T	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.			T			S		B			.	.	.	.	.														S	T	T									T	T	T	B	T	T		B													T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.											.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		537		.	.	540	.	.	.	.	.	.	.						.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	L	R	N	D	S	Q	L	N	T	P	K	A	I	L	I	D	L	I	R	A	L	P	V	C	L	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	L	G	I	I	G	Y	G	L	L	M	A	V	T	G	A	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.