 |
Job Description | P26612 | Confidence | 98.32% | Date | Thu Jan 5 11:42:59 GMT 2012 |
Rank | 124 | Aligned Residues | 81 |
% Identity | 21% | Template | d1pama3 |
SCOP info | Glycosyl hydrolase domain
| Glycosyl hydrolase domain
| alpha-Amylases, C-terminal beta-sheet domain
|
Resolution | 1.80 |
|
 |
  |   |
408 | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | |
. | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | |
|
|
. | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  | . |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
| . | . | . |
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | Q | T | L | F | F | D | H | P | N | C | I | A | F | S | R | S | G | T | D | E | F | P | G | C | V | V | V | M | S | N | G | D | D | G | E | K | T | I | . |
H | L | G | E | N | Y | G | N | K | T | W | R | D | F | L | G | . |
. |
. |
N | R | Q | E | R | V | V | T | D | E | N | G | E | A | T | F | F | C | N | G |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   | . |   |
|   |   |   |   |   |
|   |   |   |   |
|   |
|   | . | . | . |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|
|
|
|   |
|
|   |
|
|
|
|
|
|
|   |   |
| . | . |
|
|
|
|
|
|
|
|   |   |   |   |   |
|
|   |   |
|   |
|   |
|
|   |
|   |
|   |
|
|
|
|
|
|
|   |
|   |   |
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |
Template Sequence |   |
G | S | T | H | E | R | W | I | N | N | D | V | I | I | Y | E | R | K | F | G | N | N | V | . |
. |
A | V | V | A | I | N | R | N | M | N | T | P | A | S | I | T | G | L | V | T | S | L | P | R | G | S | Y | N | D | V | L | G | G | I | L | N | G | N | T | L | T | V | G | A | G | G | A | A | S | N | F | T | L | A | P |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  | T | T |  |  | . | . |  |  |  |  |  |  |
|
| S | S |
|
|  |  |  |
| S |
| B |
| S |
|
| S |  |  |  |
|
| T | T | T | T | T | T | S |
|
|
|  |  |  |
| G | G | G | B | B |
|
|  |  |  |
| T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
407 | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | |
|
430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . |
  |
  |   |
484 | . | . | . | . | . | 490 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
G | S | V | S | V | W | V |
Query Conservation |   |
  |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |
Template Sequence |   |
G | G | T | A | V | W | Q |
Template Known Secondary structure |   |
T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
485 | . | . | . | . | 490 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|