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Job DescriptionP26612
Confidence100.00%DateThu Jan 5 11:42:59 GMT 2012
Rank27Aligned Residues350
% Identity30%Templated1mxga2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDK
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Template Sequence  EEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSK
Template Known Secondary structure  GGT




TT


SS
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STTGGG

SSSTT
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S
BTTBSS
SS

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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  AQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
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Template Sequence  EELVRLIQTAHAYGIKVIADVVINHRAGG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DLEWN
Template Known Secondary structure  TT


SB



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   87..90.........100.........110..... ....120
 
   161........170.........180.........190.........200.........210.........220. ........230.......
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Query Sequence  SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWAR. . . WVMEQTQCDGFRLDAV
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Template Sequence  PFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYV
Template Known Secondary structure  TTTT
TT
TT

S


GGGBSSSSS
S

S


TTS
BB
TTSTSSTTSTT

TTG
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   121........130.........140.........150.........160.........170.........180.........190.........200
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  KHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLV
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Template Sequence  KGYGAWVVRDWLNWWGG. . . . . . WAVGEYWDTNVDALLSWAYESGA. . KVFDFPLYYKMDEAFDNNNIPALVYALQNGQT
Template Known Secondary structure  GGS


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S
TS..
TTT
TT
S
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   201........210....... ..220.........230.........240 .........250.........260.........270..
 
   318. 320.........330.........340.........350.........360.........370.........380.........390.....
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Query Sequence  EA. . DPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQL
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Template Sequence  VVSRDPFKAVTFVANHDTDIIWN. . . . . . . . . KYPAYAF. ILTYEGQPVIFYRDFEEWLN. . . . . . . . . . . . . . . . KDKL
Template Known Secondary structure  STTT
TTTS

SS



S
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   273......280.........290..... ....300.. .......310.........320.. ....
 
   396...400.........410.........420.........430
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Query Sequence  DELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEF
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Template Sequence  INLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRR
Template Known Secondary structure  T

S

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S

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   327..330.........340.........350.........360.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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