Return to main results Retrieve Phyre Job Id

Job DescriptionP26612
Confidence100.00%DateThu Jan 5 11:42:59 GMT 2012
Rank95Aligned Residues339
% Identity19%Templated1ji1a3
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10....... ..20.........30... ......40
Predicted Secondary structure 








........................................


.



Query SS confidence 















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .















.






Query Sequence  RNPTLLQCFHWYYPEG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GKLWPELAERADGFND. IGINMVW
Query Conservation          
       ........................................      
  




  .


 


Alig confidence 















........................................















.






Template Conservation     


 
  


   
                                        

  

  




   


  
 
Template Sequence  KNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKLGYIKKTLGANILY
Template Known Secondary structure 


GGGT

S
GGG


TTS
TT


TTS

S

TTS
GGG



TTTT


Template Predicted Secondary structure 

























































Template SS confidence 















































































   131........140.........150.........160.........170.........180.........190.........200.........210
 
   41........50.........60.........70.........80.........90... ......100.........110......
Predicted Secondary structure 






































....














Query SS confidence 




















































. . . .






















Query Sequence  LPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRN. . . . DIAVLLDVVVNHKMGADEKEAIR
Query Conservation 
 

          

   

           
    

  

  

  

  ....

 



 
 

 
         
Alig confidence 








...









.........





















....


















....
Template Conservation 
 

     ...  

   
  ......... 

   

 



 

  

      

 



 
 

 
     ....
Template Sequence  LNPIFKAPT. . . NHKYDTQDYM. . . . . . . . . AVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPW. . . .
Template Known Secondary structure  S


SS...SS

S
S.........
TTT


SSSSS



SB

TTSTT....
Template Predicted Secondary structure 







...









.........




















....
Template SS confidence 















































































   211........ 220......... 230.........240.........250.........260.........270....
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
Predicted Secondary structure 












































































Query SS confidence 















































































Query Sequence  VQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGN
Query Conservation                                                                                  
Alig confidence  .....................






















.......................












Template Conservation  .....................                       .......................             
Template Sequence  . . . . . . . . . . . . . . . . . . . . . FDKYNNFSSQGAYESQSSPWYNY. . . . . . . . . . . . . . . . . . . . . . . YTFYTWPDSYASF
Template Known Secondary structure  .....................T
TT

SSS

TTT
TT
TTGGG.......................B
TTT
Template Predicted Secondary structure  .....................





















.......................










Template SS confidence 















































































   275....280.........290....... ..300.........310
 
   197..200......... 210.........220. ........230.........240.. .......250........
Predicted Secondary structure 












.......










...........


Query SS confidence 












. .











. . . . .




















. . . . . . . . . . .















Query Sequence  FDYLMGENIDFRN. . HAVTEEIKYWAR. . . . . WVMEQTQCDGFRLDAVKHIPA. . . . . . . . . . . WFYKEWIEHVQEVAPK
Query Conservation         

   
..  
   
     ..... 
    








   
  ........... 
        
     
Alig confidence 












..











.....




















...........














.
Template Conservation          

       
   
   
      
     





 
    
                            .
Template Sequence  LGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNS.
Template Known Secondary structure  TTBBB

STT
TTSTTSSTTT


TTGGG
BSTT


SS
T.
Template Predicted Secondary structure 




































.
Template SS confidence 















































































   311........320.........330.........340.........350.........360.........370.........380.........
 
   259260.........270.........280.........290.........300... ......310.........320.....
Predicted Secondary structure 


















.............







Query SS confidence 












































. . . . . . . . . . . . .





















Query Sequence  PLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEASRMG. . . . . . . . . . . . . RDYDMTQIFTGTLVEADPFHAV
Query Conservation       

                       
              .............                     
Alig confidence 

















....






















.............





















Template Conservation      


           ....                                                          
Template Sequence  NAAIIGEYWGNANPWTAQ. . . . GNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRANYPTNVQQSMM
Template Known Secondary structure  T


SS

GGGTTT....SSS
SB
TTTTTSB
TTS
B



TTS
TT
Template Predicted Secondary structure 






....































Template SS confidence 















































































   390.........400....... ..410.........420.........430.........440.........450.........460.....
 
   326...330.........340.........350.........360.........370.........380......... 390.........400
Predicted Secondary structure 





































.....
Query SS confidence 































































. . . . .










Query Sequence  TLVANHDTQPLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDM. . . . . PIIEQLDELIL
Query Conservation   

 


  
              

 
  
 
  


 





 
                 .....        
  
Alig confidence 
















..












































.....










Template Conservation   
  


  
       ..       
   


 

 
 





 
  
      
    
               
  
Template Sequence  NFLSNHDITRFATRSGG. . DLWKTYLALIFQMTYVGTPTIYYGDEYGMQGGADPDNRRSFDWSQATPSNSAVALTQKLIT
Template Known Secondary structure  S

TTS

TTT..
TTSSSTTGGGT



STTGGG



TTSSSTTS
Template Predicted Secondary structure 









..



























Template SS confidence 















































































   466...470.........480.. .......490.........500.........510.........520.........530.........540...
 
   401......
Predicted Secondary structure 


Query SS confidence 






Query Sequence  ARQRFAH
Query Conservation 

     
Alig confidence 






Template Conservation 

   

Template Sequence  IRNQYPA
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 






   544.....550
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions