Job Description P26612 Confidence 100.00% Date Thu Jan 5 11:42:59 GMT 2012 Rank 50 Aligned Residues 339 % Identity 17% Template d1jaea2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.65

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.																									.	.	.
Query SS confidence																												.																									.	.	.
Query Sequence		N	P	T	L	L	Q	C	F	H	W	Y	Y	P	E	G	G	K	L	W	P	E	L	A	E	R	A	.	D	G	F	N	D	I	G	I	N	M	V	W	L	P	P	A	Y	K	G	A	S	G	G	Y	.	.	.	S	V	G	Y	D	S	Y	D	L	F	D	L	G	E	F	D	Q	K	G	S	I	P	T	K	Y	G
Query Conservation																												.																									.	.	.
Alig confidence													.	.	.	.	.	.	.									.																									.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		R	N	S	I	V	H	L	F	E	W	K	.	.	.	.	.	.	.	W	N	D	I	A	D	E	C	E	R	F	L	Q	P	Q	G	F	G	G	V	Q	I	S	P	P	N	E	Y	L	V	A	D	G	R	P	W	W	E	R	Y	Q	P	V	S	Y	.	.	.	.	.	.	.	.	.	.	I	I	N	T	R	S	G
Template Known Secondary structure									T	T			.	.	.	.	.	.	.											T	T	T	T	T	T										S		B	B			T	T			G	G	G	G	G	S	B			S	.	.	.	.	.	.	.	.	.	.		S			T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20								.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.											.	.	.	.	70	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	A	Q	L	L	A	A	I	D	A	L	K	R	N	D	I	A	V	L	L	D	V	V	V	N	H	K	M	G	A	D	E	K	E	A	I	R	V	Q	R	V	N	A	D	D	R	T	Q	I	D	E	E	I	I	E	C	E	G	W	T	R	Y	T	F	P	A	R	A	G	Q	Y	S	Q	F	I	W	D	F	K
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	S	A	F	T	D	M	T	R	R	C	N	D	A	G	V	R	I	Y	V	D	A	V	I	N	H	M	T	G	M	N	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	S
Template Known Secondary structure																T	T										S	B			S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																																												.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	F	S	G	I	D	H	I	E	N	P	D	E	D	G	I	F	K	I	V	N	D	Y	T	G	E	G	W	N	D	Q	V	D	D	E	L	G	N	F	D	Y	L	M	G	E	N	I	D	F	R	N	H	A	V	T	E	E	I	K	Y	W	A	R	W	V	M	E	Q	T	Q	C	D	G	F	R	L	D	A	V	K
Query Conservation
Alig confidence																																																																				.
Template Conservation																																																																				.
Template Sequence		G	S	S	A	D	H	D	G	M	N	Y	P	A	V	P	Y	G	S	G	D	F	H	S	P	C	E	V	N	N	Y	Q	D	A	D	N	V	R	N	C	E	L	V	G	L	R	D	L	N	Q	G	S	D	Y	V	R	G	V	L	I	D	Y	M	N	H	M	I	.	D	L	G	V	A	G	F	R	V	D	A	A	K
Template Known Secondary structure		S				B	T	T	T	T	B	B	T	T	T	T	B		G	G	G	B					B				T	T								S	B	B	T	T	B		B	B		T	T	S																.		T	T							T	T	G	G
Template Predicted Secondary structure																																																																				.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.								.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																						.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.
Query Sequence		H	I	P	A	W	F	Y	K	E	W	I	E	H	V	Q	E	V	A	P	K	.	.	.	.	.	.	.	P	L	F	I	V	A	E	Y	W	S	H	E	V	D	K	L	Q	T	Y	I	D	Q	V	E	G	K	T	M	L	F	D	A	P	L	Q	M	K	F	H	E	A	S	R	M	G	R	D	Y	D	M	T	Q	I
Query Conservation																						.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																							.	.
Template Conservation																																																			.	.
Template Sequence		H	M	S	P	G	D	L	S	V	I	F	S	G	L	K	N	L	N	T	D	Y	G	F	A	D	G	A	R	P	F	I	Y	Q	E	V	I	D	L	G	G	E	A	I	S	K	N	E	Y	T	.	.	G	F	G	C	V	L	E	F	Q	F	G	V	S	L	G	N	A	F	Q	G	G	N	Q	L	K	N	L	A	N
Template Known Secondary structure		G	S											T						G	G	G	T			T	T													S	S	S	S			G	G	G	T	T	.	.	T	S	S																T	T	T	S		G	G	G	G	G	G
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		F	T	G	T	L	V	E	A	D	P	F	H	A	V	T	L	V	A	N	H	D	T	Q	P	L	Q	A	L	.	.	E	A	P	V	E	P	W	F	K	P	L	A	Y	A	L	I	L	L	R	E	N	G	V	P	S	V	F	Y	P	D	L	Y	G	A	H	Y	E	D	V	G	G	D	G	Q	T	Y	P	I	D	M
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		W	G	P	E	W	G	L	L	E	G	L	D	A	V	V	F	V	D	N	H	D	N	Q	R	T	G	G	S	Q	I	L	T	Y	K	N	P	K	P	Y	K	M	A	I	A	F	M	L	A	H	P	Y	G	T	T	R	I	M	S	S	F	D	F	T	D	N	D	Q	G	P	P	Q	D	G	S	G	N	L	I	S	P
Template Known Secondary structure			S	G	G	G	T				G	G	G					S			T	T					S		T	T				T	T	S														S		S	S								B			S	S	T	T					B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		390																.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	E	Q	L	D	E	L	I	L	A	R	Q	R
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	N	D	D	N	T	C	S	N	G	Y	V	C	E	H	R	W	R	Q	V	Y	G	M	V	G	F	R	N	A
Template Known Secondary structure					T	T	S				T	T	B			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions