Job Description P26612 Confidence 100.00% Date Thu Jan 5 11:42:59 GMT 2012 Rank 55 Aligned Residues 318 % Identity 23% Template d1gcya2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.60

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		3	.	.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure															.	.																																						.	.	.	.
Query SS confidence															.	.																																						.	.	.	.
Query Sequence		N	P	T	L	L	Q	C	F	H	W	Y	Y	P	.	.	E	G	G	K	L	W	P	E	L	A	E	R	A	D	G	F	N	D	I	G	I	N	M	V	W	L	P	P	A	Y	K	G	A	S	G	G	Y	.	.	.	.	S	V	G	Y	D	S	Y	D	L	F	D	L	G	E	F	D	Q	K	G	S	I	P	T	K
Query Conservation															.	.																																						.	.	.	.
Alig confidence															.	.																																						.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	I	I	L	Q	G	F	H	W	N	V	V	R	E	A	P	N	D	W	Y	N	I	L	R	Q	Q	A	A	T	I	A	A	D	G	F	S	A	I	W	M	P	V	P	W	R	D	F	S	S	W	S	K	S	G	G	G	E	G	Y	F	W	H	D	F	.	.	.	.	.	.	.	.	.	.	N	K	N	G	R
Template Known Secondary structure											T	T					S	T	T	T															T	T		S								S						B				B			S	S	T	T		S	S	S	.	.	.	.	.	.	.	.	.	.		S		S	S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80											.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	D	K	A	Q	L	L	A	A	I	D	A	L	K	R	N	D	I	A	V	L	L	D	V	V	V	N	H	K	M	G	A	D	E	K	E	A	I	R	V	Q	R	V	N	A	D	D	R	T	Q	I	D	E	E	I	I	E	C	E	G	W	T	R	Y	T	F	P	A	R	A	G	Q	Y	S	Q	F	I	W	D
Query Conservation
Alig confidence																																	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	S	D	A	Q	L	R	Q	A	A	S	A	L	G	G	A	G	V	K	V	L	Y	D	V	V	P	N	H	M	N	.	.	R	G	Y	P	D	K	E	I	N	L	P	A	G	Q	G	F	W	R	N	D	C	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S																T	T										S	B			.	.	T	T		S	S		S					S	S	S	S		B	G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	C	F	S	G	I	D	H	I	E	N	P	D	E	D	G	I	F	K	I	V	N	D	Y	T	G	E	G	W	N	D	Q	V	D	D	E	L	G	N	F	D	Y	L	M	G	E	N	I	D	F	R	N	H	A	V	T	E	E	I	K	Y	W	A	R	W	V	M	E	Q	T	Q	C	D	G	F	R	L	D	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	G	N	Y	P	N	D	C	D	D	G	D	R	F	I	G	G	D	A	D	L	N	T	G	H	P	Q	V	Y	G	M	F	R	D	E	F	T	N	L	R	S	Q	Y	G	A	G	G	F	R	F	D	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S		B	T	T	B	S	S			S	T	T	S	T	T	B	B		T	T	S																		S								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.									.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.
Query Sequence		V	K	H	I	P	A	W	F	Y	K	E	W	I	E	H	V	Q	E	V	A	P	K	P	L	F	I	V	A	E	Y	W	S	H	E	V	D	K	L	Q	T	Y	I	D	Q	V	E	G	K	T	M	L	F	D	A	P	L	Q	M	.	.	.	.	.	.	.	.	K	F	H	E	A	S	R	M	G	R	D	Y	D	M
Query Conservation																																																												.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																																							.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		V	R	G	Y	A	P	E	R	V	N	S	W	M	T	D	S	.	.	.	.	A	D	N	S	F	C	V	G	E	L	W	K	G	P	S	E	Y	P	N	W	D	W	R	N	T	A	S	W	Q	Q	I	I	K	D	W	S	D	R	A	K	C	P	V	F	D	F	A	L	K	E	R	M	Q	N	G	S	I	A	D	W
Template Known Secondary structure		G	G	G	S													.	.	.	.		T	T	S										G	G	G	S		T	T	S	G	G	G	G	S														T	S														S		G	G	G	G
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.					.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		T	Q	I	F	T	G	T	L	V	E	A	D	P	F	H	A	V	T	L	V	A	N	H	D	T	Q	P	L	Q	A	L	E	A	P	V	E	P	.	.	.	.	W	F	K	P	L	A	Y	A	L	I	L	L	R	E	N	G	V	P	S	V	F	Y	P	D	L	Y	G	A	H	Y	E	D	V	G	G	D	G	Q	T
Query Conservation																																							.	.	.	.
Alig confidence																																							.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	G	L	N	G	N	P	D	P	R	W	R	E	V	A	V	T	F	V	D	N	H	D	T	G	Y	S	P	G	Q	N	G	G	Q	H	H	W	A	L	Q	D	G	L	I	R	Q	A	Y	A	Y	I	L	T	S	P	G	T	P	V	V	Y	W	D	H	M	Y	D	W	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	S	G	G	G		S	S					T	T					S			T	T	T	S	B		S	S	G	G	G	B			S	S				G	G	G											S	S	S											T	S	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	I	D	M	P	I	I	E	Q	L	D	E	L	I	L	A	R	Q	R
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	Y	G	D	F	I	R	Q	L	I	Q	V	R	R	A
Template Known Secondary structure		.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								341	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions