Job Description P26612 Confidence 100.00% Date Thu Jan 5 11:42:59 GMT 2012 Rank 62 Aligned Residues 335 % Identity 16% Template d1g94a2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.74

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																												.																									.
Query SS confidence																												.																									.
Query Sequence		N	P	T	L	L	Q	C	F	H	W	Y	Y	P	E	G	G	K	L	W	P	E	L	A	E	R	A	.	D	G	F	N	D	I	G	I	N	M	V	W	L	P	P	A	Y	K	G	A	S	G	G	Y	.	S	V	G	Y	D	S	Y	D	L	F	D	L	G	E	F	D	Q	K	G	S	I	P	T	K	Y	G	D	K
Query Conservation																												.																									.
Alig confidence													.	.	.	.	.	.	.									.																									.										.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template Sequence		P	T	T	F	V	H	L	F	E	W	N	.	.	.	.	.	.	.	W	Q	D	V	A	Q	E	C	E	Q	Y	L	G	P	K	G	Y	A	A	V	Q	V	S	P	P	N	E	H	I	T	G	S	Q	W	W	T	R	Y	Q	P	V	S	Y	.	.	.	.	.	.	.	.	.	.	E	L	Q	S	R	G	G	N	R
Template Known Secondary structure									T	T			.	.	.	.	.	.	.											T					T										S		B	B		S	S	S	G	G	G	G	G	S	B	S		S	.	.	.	.	.	.	.	.	.	.		S		B	T	T	B
Template Predicted Secondary structure													.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.								.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.											.	.	.	.	60	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	L	L	A	A	I	D	A	L	K	R	N	D	I	A	V	L	L	D	V	V	V	N	H	K	M	G	A	D	E	K	E	A	I	R	V	Q	R	V	N	A	D	D	R	T	Q	I	D	E	E	I	I	E	C	E	G	W	T	R	Y	T	F	P	A	R	A	G	Q	Y	S	Q	F	I	W	D	F	K	C	F
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	F	I	D	M	V	N	R	C	S	A	A	G	V	D	I	Y	V	D	T	L	I	N	H	M	A	A	G	S	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	A	G
Template Known Secondary structure														T	T										S				S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.																																													.	.	.	100
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	I	D	H	I	E	N	P	D	E	D	G	I	F	K	I	V	N	D	Y	T	G	E	G	W	N	D	Q	V	D	D	E	L	G	N	F	D	Y	L	M	G	E	N	I	D	F	R	N	H	A	V	T	E	E	I	K	Y	W	A	R	W	V	M	E	Q	T	Q	C	D	G	F	R	L	D	A	V	K	H	I
Query Conservation
Alig confidence																																																																		.
Template Conservation																																																																		.
Template Sequence		N	S	F	G	N	K	S	F	P	I	Y	S	P	Q	D	F	H	E	S	C	T	I	N	N	S	D	Y	G	N	D	R	Y	R	V	Q	N	C	E	L	V	G	L	A	D	L	D	T	A	S	N	Y	V	Q	N	T	I	A	A	Y	I	N	D	L	Q	.	A	I	G	V	K	G	F	R	F	D	A	S	K	H	V
Template Known Secondary structure					B	T	T	B		S	S			G	G	G	B					B			T	T												S	B	S	T	T				B		T	T	S																.			T								T	G	G	G	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	W	F	Y	K	E	W	I	E	H	V	Q	E	V	A	P	K	P	L	F	I	V	A	E	Y	W	S	H	E	V	D	K	L	Q	T	Y	I	D	Q	V	E	G	K	T	M	L	F	D	A	P	L	Q	M	K	F	H	E	A	S	R	M	G	R	D	Y	D	M	T	Q	I	F	T	G	T	L	V	E	A	D
Query Conservation
Alig confidence												.	.	.	.																											.	.																													.
Template Conservation												.	.	.	.																											.	.																													.
Template Sequence		A	A	S	D	I	Q	S	L	M	A	.	.	.	.	K	V	N	G	S	P	V	V	F	Q	E	V	I	D	Q	G	G	E	A	V	G	A	S	E	Y	L	.	.	S	T	G	L	V	T	E	F	K	Y	S	T	E	L	G	N	T	F	R	N	G	S	L	A	W	L	S	N	.	F	G	E	G	W	G	F	M	P
Template Known Secondary structure												.	.	.	.	T	S		S											S	S			S	S		G	G	G	G	G	.	.	G	G	S																		S		G	G	G	G	G	G	.	T	T	G	G	G	T
Template Predicted Secondary structure												.	.	.	.																											.	.																													.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.					.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380												.	.	.	.	.
Predicted Secondary structure																									.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	F	H	A	V	T	L	V	A	N	H	D	T	Q	P	L	Q	A	L	E	A	P	V	.	.	.	.	E	P	W	F	K	P	L	A	Y	A	L	I	L	L	R	E	N	G	V	P	S	V	F	Y	P	D	L	Y	G	A	H	Y	E	D	V	G	G	.	.	.	.	.	.	.	.	.	.	.	D	G	Q	T	Y
Query Conservation																									.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	S	A	V	V	F	V	D	N	H	D	N	Q	R	G	H	G	G	A	G	N	V	I	T	F	E	D	G	R	L	Y	D	L	A	N	V	F	M	L	A	Y	P	Y	G	Y	P	K	V	M	S	S	Y	D	F	H	G	D	T	D	A	G	G	P	N	V	P	V	H	N	N	G	N	L	E	C	F	A	S	N
Template Known Secondary structure		G	G	G					S			T	T	G	G	G	T	S	S			T	T	S			G	G	G	T													S		S	S								B			T	T		T	T					S	S		S			T	T				B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	D	M	P	I	I	E	Q	L	D	E	L	I	L	A	R	Q	R	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	K	C	E	H	R	W	S	Y	I	A	G	G	V	D	F	R	N	N	T	A
Template Known Secondary structure		B			G	G	G	S													S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions