Job Description P26612 Confidence 100.00% Date Thu Jan 5 11:42:59 GMT 2012 Rank 69 Aligned Residues 324 % Identity 27% Template d1avaa2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.90

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.
Predicted Secondary structure																.																																																										.
Query SS confidence																.																																																										.
Query Sequence		T	L	L	Q	C	F	H	W	Y	Y	P	E	G	G	.	K	L	W	P	E	L	A	E	R	A	D	G	F	N	D	I	G	I	N	M	V	W	L	P	P	A	Y	K	G	A	S	G	G	Y	S	V	G	Y	D	S	Y	D	L	F	D	L	G	E	F	D	Q	K	G	S	I	P	T	.	K	Y	G	D	K	A	Q
Query Conservation																.																																																										.
Alig confidence																.																																.	.	.											.	.	.	.	.	.	.	.	.					.
Template Conservation																																																.	.	.											.	.	.	.	.	.	.	.	.
Template Sequence		V	L	F	Q	G	F	N	W	E	S	W	K	H	N	G	G	W	Y	N	F	L	M	G	K	V	D	D	I	A	A	A	G	I	T	H	V	W	L	P	P	A	S	Q	S	V	A	.	.	.	E	Q	G	Y	M	P	G	R	L	Y	.	.	.	.	.	.	.	.	.	D	L	D	A	S	K	Y	G	N	K	A	Q
Template Known Secondary structure									T	T	G	G	G		T	T								T	T								T										S		B	S	S	.	.	.	T	T	S	S	S	B			T	T	.	.	.	.	.	.	.	.	.			T	T		T	T
Template Predicted Secondary structure																																																.	.	.											.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.										.	.	60	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	A	I	D	A	L	K	R	N	D	I	A	V	L	L	D	V	V	V	N	H	K	M	G	A	D	E	K	E	A	I	R	V	Q	R	V	N	A	D	D	R	T	Q	I	D	E	E	I	I	E	C	E	G	W	T	R	Y	T	F	P	A	R	A	G	Q	Y	S	Q	F	I	W	D	F	K	C	F	S	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	S	L	I	G	A	L	H	G	K	G	V	K	A	I	A	D	I	V	I	N	H	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	H	K	D	G	R	G	I	Y	C	I
Template Known Secondary structure													T										S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S				T	T	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.																																												.	.	.	.	.	100	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	H	I	E	N	P	D	E	D	G	I	F	K	I	V	N	D	Y	T	G	E	G	W	N	D	Q	V	D	D	E	L	G	N	F	D	Y	L	M	G	E	N	I	D	F	R	N	H	A	V	T	E	E	I	K	Y	W	A	R	W	V	M	E	Q	T	Q	C	D	G	F	R	L	D	A	V	K	H	I	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	G	G	T	P	D	A	R	L	D	W	G	P	H	M	I	C	R	D	D	R	P	Y	A	D	G	T	G	N	P	D	T	G	A	D	F	G	A	A	P	D	I	D	H	L	N	L	R	V	Q	K	E	L	V	E	W	L	N	W	L	K	A	D	I	G	F	D	G	W	R	F	D	F	A	K	G	Y	S	A
Template Known Secondary structure					S	S	S	S	S	T	T				G	G	G	B		T	T		T	T	T			S		S				S	S				T	T	S		B	B		T	T	S																	T	T								T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.																		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		W	F	Y	K	E	W	I	E	H	V	Q	E	V	A	P	K	P	L	F	I	V	A	E	Y	W	S	H	E	V	D	K	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	I	D	Q	V	E	G	K	T	M	L	F	D	A	P	L	Q	M	K	F	H	E	A	S	R	M	G	.	R
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence													.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation													.	.	.	.	.
Template Sequence		D	V	A	K	I	Y	I	D	R	S	E	.	.	.	.	.	P	S	F	A	V	A	E	I	W	T	S	L	A	Y	G	G	D	G	K	P	N	L	N	Q	D	Q	H	R	Q	E	L	V	N	W	V	D	K	V	G	G	K	G	P	A	T	T	F	D	F	T	T	K	G	I	L	N	V	A	V	E	G	E	L	W
Template Known Secondary structure													.	.	.	.	.		S												B		T	T	S	S	B		S																		T	T	S	S																T	T	T		G	G
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	D	M	T	Q	I	F	T	G	T	L	V	E	A	D	P	F	H	A	V	T	L	V	A	N	H	D	T	Q	P	L	Q	A	L	E	A	P	V	E	P	W	F	K	P	L	A	Y	A	L	I	L	L	R	E	N	G	V	P	S	V	F	Y	P	D	L	Y	G	A	H	Y	E	D	V	G	G	D	G	Q	T
Query Conservation
Alig confidence																																								.												.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.												.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	R	G	T	D	G	K	A	P	G	M	I	G	W	W	P	A	K	A	V	T	F	V	D	N	H	D	T	G	S	T	Q	H	M	W	P	F	.	P	S	D	R	V	M	Q	G	Y	A	Y	.	I	L	T	H	P	G	T	P	C	I	F	Y	D	H	F	F	D	W	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	S		T	T	S	S		S	S	G	G	G	T		G	G	G					S			T	T	T	S	T	T	T		S	S			.		G	G	G								.				S	S	S											T	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.												.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	I	D	M	P	I	I	E	Q	L	D	E	L	I	L	A	R	Q	R	F	A
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	G	L	K	E	E	I	D	R	L	V	S	V	R	T	R	H	G
Template Known Secondary structure		.	.	.	.	.	S															T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions