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Job DescriptionP26612
Confidence100.00%DateThu Jan 5 11:42:59 GMT 2012
Rank82Aligned Residues426
% Identity21%Templatec2zidA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:dextran glucosidase; PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2....... 10.........20.........30.........40.........50.........60.........70.......
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Query Sequence  RNPTLLQC. . . . FHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKY
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Template Sequence  HKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYD. . SPMDDNGYDIANYE. . . . . . . . . AIADIF
Template Known Secondary structure  GG


GGGT

SSSSSS

TTT
S


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TTTTSS
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GGG
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   7..10.........20.........30.........40.........50..... ....60......... 70.....
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
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Query Sequence  GDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDF
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Template Sequence  GNMADMDNLLTQAKMRGIKIIMDLVVNHTS. . DEHAWFIEAREHPDSSER. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

TTT


SB

..TTS
TTSGGG..............................
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   76...80.........90.........100..... ....110.........120...
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  KCFSGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAV
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Template Sequence  . . . . . . DYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQKIYDMMNFWI. DKGIGGFRMDVI
Template Known Secondary structure  ......GGB
SS

S
B
TTSSBSTTTT
SS
TTS
BB
TT
.TTT

TTG
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   124.....130.........140.........150.........160.........170.........180.... .....190......
 
   238.240. ........250.........260.........270.........280. ........290.........300..
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Query Sequence  KHIP. . . . . . . . . . . . . . AWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQV. EGKTMLFDAPLQMKFHEASRM
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Template Conservation                                 ..        
                                      
Template Sequence  DMIGKIPAQHIVSNGPKLHAYLKEMNAASFG. . QHDLLTVGQTWGATPEIAKQYSNPVNHELSMVFQFEHIGLQHKPEAP
Template Known Secondary structure  GGTT
BGGGTB
SS
TTTGG..GS


TT


GGG
S
S

TTGGGGB
TTS
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   197..200.........210.........220....... ..230.........240.........250.........260.........270....
 
   303.... ..310......... 320.........330.........340..... ....350.........360.........370.
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Query Sequence  GRDYD. . . . . . . MTQIFTGTLVEA. . DPFHAVTLVANHDTQPLQALEAPVEP. . WFKPLAYALILLRENGVPSVFYPDLY
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Template Sequence  KWDYVKELNVPALKTIFNKWQTELELGQGWNSLFWNNHDLPRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQGEEI
Template Known Secondary structure  TTSB

S

S
TTT



S

TTS

S
SSTTTSSSTTGGG
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   275....280.........290.........300.........310.........320.........330.........340.........350....
 
   372.......380. .......
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Query Sequence  GAHYEDVGGD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GQTYPID. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation 
                                              
  
 
       
                   
Template Sequence  GMTNYPFKDLNELDDIESLNYAKEAFTNGKSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPNYKDINV
Template Known Secondary structure  T






SGGG


TTT


GGGG
S




SSGGGGS

SSS
SS


GGGGTS
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   355....360.........370.........380.........390.........400.........410.........420.........430....
 
   389390.........400....... ..410.........420.........430.........440.........450........
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Query Sequence  . . . . . . . MPIIEQLDELILARQRFAH. . . GVQTLFFDHPNCIAFSRSGTDEFPGCVVVMSNGDDGEKTIHLGENYGNKTW
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Template Sequence  QAALKNSNSIFYTYQQLIQLRKENDWLVDADFELLPTADKVFAYLRKVREE. . . RYLIVVNVSDQEEVLEIDVD. . . . KQ
Template Known Secondary structure  STTS
T




TTTT...
SSS






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   435....440.........450.........460.........470.........480..... ....490.........500..... ..
 
   459460.........470.........480.........490.
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Query Sequence  RDFLGNRQERVVTDENGEATFFCNGGSVSVWVI
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Template Sequence  ETLISNTNESA. . . . . ALANHKLQPWDAFCIKI
Template Known Secondary structure  SS
.....T
TT
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   508.510........ .520.........530.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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