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Job DescriptionP26612
Confidence100.00%DateThu Jan 5 11:42:59 GMT 2012
Rank44Aligned Residues395
% Identity17%Templatec2wanA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:pullulanase; PDBTitle: pullulanase from bacillus acidopullulyticus
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.........50.. .......60.........70......... 80...
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Query Sequence  GGKLWPELAERADGFNDIGINMVWLPPAYKGASGGY. . . . . . SVGYDSYDLFDLGEFDQKGSIPTKYGD. . . . . . . KAQL
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Template Sequence  GTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYN. . . . . . . . . VPEGAYATTPEGTARITEL
Template Known Secondary structure  S
B
GGG
B
T

S

SSS
TTSTTS




S.........
GGGSS
SSTT
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   464.....470.........480.........490.........500.........510..... ....520.........530....
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  LAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGI
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Template Sequence  KQLIQSLHQQRIGVNMDVVYNHTFDVMVS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT

TT

S
SSSS...................................................
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   535....540.........550.........560...
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  DHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHIPAW
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Template Sequence  . . . . . . . . . . . . . . DFDKIVPQYYYRTDSNGNYTNGSGGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKD
Template Known Secondary structure  ..............STTTTB
B
TTS
B

TT



B
TTS


TTGGGG
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   564.....570.........580.........590.........600.........610.........620.........
 
   244.....250.........260.........270.........280 .........290........ .300.........310
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Query Sequence  FYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQ. . . . . VEGKTMLFDAPLQMKFHE. . . . . . . . ASRMGRDYDMTQ
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Template Sequence  TMAKISNELHAINP. GIVLYGEPWTGGTSGLSSDQLVTKGQQKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDV
Template Known Secondary structure 
T.T

SS
SS

SS
TTTS

TTTTTTTT



TT
TT


TTTT
SS
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   631........640.... .....650.........660.........670.........680.........690.........700.........
 
   311....... .320.........330.........340. ........350.........360.........370........
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Query Sequence  IFTGTLVE. . . . . ADPFHAVTLVANHDTQPLQALEA. . . . . . . PVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDV
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Template Sequence  IKNGVIGSIQDFTSAPSETINYVTSHDNMTLWDKILASNPSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGN
Template Known Secondary structure  BTTTTTT
SSGGG
S

SSS


TTS
SBSTTGGGT


TT
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   710.........720.........730.........740.........750.........760.........770.........780.........
 
   379380....... ..390.........400......... 410.........420....... ..430.....
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Query Sequence  GGDGQTYPI. . . . . . . . . . . DMPIIEQLDELILARQRFAHGV. . . . . . . . . . QTLFFDHPNCIAFSRSGT. . DEFPGCVV
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Template Sequence  DNSYNAGDSVNQFDWSRKAQFKDVFDYFSSMIHLRNQHPAFRMTTADQIKQNLTFLESPTNTVAFELKNYANHDTWKNII
Template Known Secondary structure  S

TT

S

TT
GGGG

S



TT

SSGGG
SSS
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   790.........800.........810.........820.........830.........840.........850.........860.........
 
   436...440.........450.........460.........470.........480.........490
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Query Sequence  VMSNGDDGEKTIHLGENYGNKTWRDFLGNRQERVVTDENGEATFFCNGGSVSVWV
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Template Sequence  VMYNPNKTSQTLNLP. . . . SGDWTIVGLGDQIGEKSLGHVMGNVQVPAISTLILK
Template Known Secondary structure 
SSS


....SS
TTSSS
S

S
SS
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   870.........880.... .....890.........900.........910.........920
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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