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Job DescriptionP26612
Confidence100.00%DateThu Jan 5 11:42:59 GMT 2012
Rank58Aligned Residues408
% Identity18%Templatec2gdvA_
PDB info PDB header:transferaseChain: A: PDB Molecule:sucrose phosphorylase; PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDK
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Template Sequence  MKNKVQLITYADR. . LGDGTIKSMTDILRTRFDGVYDGVHILPFFTP. FDGADAGFDPIDHT. . . . . . . . . KVDERLGSW
Template Known Secondary structure 

SS

SSS..BSSSSSTTT
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.SSSSSTTSS
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Query Sequence  AQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
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Template Sequence  DDVAELS. . . . . KTHNIMVDAIVNHMS. . WESKQFQDVLAKGE. . . . . . . . . . . . . . . . . . . . . . . ESEYYPMFLTMSSV
Template Known Secondary structure  T.....TTS
S..TTSGG.......................GSTTGGGB
B
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   6970..... ....80.........90 .........100.... .....110........
 
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Query Sequence  SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHI
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Template Sequence  FPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMA. ASHVSYIRLDAVGYG
Template Known Secondary structure 
TT


TS

SSSS
STT
SSSTTB
TTS.TT

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   119120.........130.........140.........150.........160.........170.........180.. .......190.......
 
   241........250.........260.........270.........280.........290.........300.........310
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Query Sequence  . . . . . . . . . . PAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQ
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Template Sequence  AKEAGTSCFMTPKTFKLISRLREEGVKRGLEILIEVHSYYKKQVEI. . . . ASKVDRVYDFALPPLLLHALSTGHVEPVAH
Template Known Secondary structure 


TTS
SSS
TTT



S
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   198.200.........210.........220.........230.........240... ......250.........260.........270...
 
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Query Sequence  IFTGTLVEADPFHAVTLVANHDTQPLQALEAPV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  WTDIR. . . . . PNNAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNS
Template Known Secondary structure  S.....
SS
S

SS
B
STTTS

SS
TTS

SS
TTTSGGGSB
S
SSSB
S
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   274.... .280.........290.........300.........310.........320.........330.........340........
 
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Query Sequence  . . . . . . . EPWFKPLAYALILLRENGVPSVFYPDLYGA. . . . . . . . . HYEDVGGDGQTYPI. . . . . . . DMPIIEQLDELIL
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Template Sequence  TYYSALGCNDQHYIAARAVQFFLPGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAK
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TTT
SSSTT




BGGGGG


B
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Query Sequence  ARQRFAH. . GVQTLFFDHPNCIAFSRSGTDEFPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGN
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Template Sequence  FRNELDAFDGTFSYTTDDDTSISFTWRGETSQ. . ATLTFEPKRGLGVDNTTPVA. . MLEWEDSAGD
Template Known Secondary structure 
GGGGSTTT
SS
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GGGG
STT

S

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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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