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Job DescriptionP26612
Confidence100.00%DateThu Jan 5 11:42:59 GMT 2012
Rank3Aligned Residues475
% Identity45%Templatec1ud8A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:amylase; PDBTitle: crystal structure of amyk38 with lithium ion
Resolution2.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  NPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQ
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Template Sequence  NGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQA. DVGYGAYDLYDLGEFNQKGTVRTKYGTKAQ
Template Known Secondary structure 





TT

SSS
T




SSSTT.

SSSTT
SS
S
BTTBSS
SS

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   4.....10.........20.........30.........40.........50.. .......60.........70.........80..
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  LLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSG
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Template Sequence  LERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNG
Template Known Secondary structure  TT


S


STT
S

B

GGGTTSS



B
GGG
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  IDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHIPA
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Template Sequence  VDWDQRYQENHIFRF. . . . ANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPF
Template Known Secondary structure  TTTT....TT



SS


TTS




SS
TTST
STTTTSS
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   163......170....... ..180.........190.........200.........210.........220.........230........
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  WFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPF
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Template Sequence  WYTSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILRGSLVEAHPM
Template Known Secondary structure 
SS





S
TS
S

SSS
GGGSSTT

TT
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
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Query Sequence  HAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILAR
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Template Sequence  HAVTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKK. . . . . . . . . . DMIDELLDAR
Template Known Secondary structure  S
BS

TTTSTTSTT




TTTSSSS

T
BGGGTB


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   319320.........330.........340.........350.........360.........370........ .380........
 
   403......410.........420........ .430.........440.........450.........460.........470.........480
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Query Sequence  QRFAHGVQTLFFDHPNCIAFSRSGTD. . EFPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQERVVTDENGEATFF
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Template Conservation       
          
 

 
          
 

 

         
     
    
        
 
   
     
Template Sequence  QNYAYGTQHDYFDHWDVVGWTREGSSSRPNSGLATIMSNGPGGSKWMYVGRQNAGQTWTDLTGNNGASVTINGDGWGEFF
Template Known Secondary structure  T

S
TTSSS


TTSTT

SSS


GGGTT
TTSS




TTS
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   389390.........400.........410.........420.........430.........440.........450.........460........
 
   481........490..
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Query Sequence  CNGGSVSVWVIE
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Template Sequence  TNGGSVSVYVNQ
Template Known Secondary structure 
TT

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   469470.........480
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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