Job Description P76007 Confidence 96.81% Date Thu Jan 5 12:17:17 GMT 2012 Rank 21 Aligned Residues 192 % Identity 11% Template c3mt5A_ PDB info PDB header:membrane protein, transport protein Chain: A: PDB Molecule:potassium large conductance calcium-activated channel, PDBTitle: crystal structure of the human bk gating apparatus Resolution 3.00 Å

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		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.
Predicted Secondary structure																					.																																																	.	.	.	.
Query SS confidence																					.																																																	.	.	.	.
Query Sequence		V	L	V	S	L	L	L	Q	G	T	S	L	S	W	A	A	K	K	A	.	K	V	V	V	P	P	V	G	R	P	V	S	R	V	G	L	D	I	H	P	E	N	P	W	E	Q	F	V	Y	Q	L	S	A	D	K	W	C	V	G	A	A	L	R	D	L	H	M	P	.	.	.	.	K	E	T	R	I	A	A	L
Query Conservation																					.																																																	.	.	.	.
Alig confidence																					.																																																	.	.	.	.
Template Conservation
Template Sequence		L	K	L	G	F	I	A	Q	S	C	L	A	Q	G	L	S	T	M	L	A	N	L	F	S	M	R	S	F	I	K	I	E	E	D	T	W	Q	K	Y	Y	L	E	G	V	S	N	E	M	Y	T	E	Y	L	S	S	A	F	V	G	L	S	F	P	T	V	C	E	L	C	F	V	K	L	K	L	L	M	I	A	I
Template Known Secondary structure													S	T	T							T	T	T	S									S	S	S										T										G	G	G	T	T	S	B											T	T
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	R	D	N	Q	L	L	H	P	T	G	S	T	R	L	R	E	G	D	V	L	C	V	I	G	R	E	R	D	L	P	A	L	G	K	L	F	S	Q	S	P	P	V	A	L	D	Q	R	F	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Y	S	R	I	L	I	N	P	G	N	H	L	K	I	Q	E	G	T	L	G	F	F	I	A	S	D	A	K	E	V	K	R	A	F	F	Y	C	K	D	N	M	D	S	N	V	K	K	Y	D	S	T	G	M	F	H	W	C	A	P	K	E	I	E	K	V	I	L	T	R	S	E	A	A	M	T	V	L	S	G
Template Known Secondary structure									S			T	T		B			T	T								S							T	T	T	S					T	T	G	G	G	S					T	T	S		B	B							G	G	G	T	B									S				S
Template Predicted Secondary structure
Template SS confidence
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
			498	.	500	.	.	.	.	.	.	.	.	.	510	.	.													.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.					.	.	.	.	.	.	.									.	550	.	.
Predicted Secondary structure		.																.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.								.	.	.	.	.	.	.	.
Query SS confidence		.																.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.								.	.	.	.	.	.	.	.
Query Sequence		.	D	F	I	L	E	A	S	A	K	Y	A	D	V	A	L	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	G	L	E	D	G	R	E	Y	R	D	K	Q	Q	T	L	G	E	I	V	Q	Q	L	L	G	A	A	P	.	.	.	.	V	V	G	D	Q	V	E	.	.	.	.	.	.	.	.	F	A	G	M
Query Conservation		.																.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.								.	.	.	.	.	.	.	.
Alig confidence		.																.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	V	V	C	I	F	G	D	V	S	S	A	L	I	G	L	R	N	L	V	M	P	L	R	A	S	N	F	H	Y	H	E	L	K	H	I	V	F	V	G	S	I	E	Y	L	K	R	E	W	E	T	L	H	N	F	P	K	V	S	I	L	P	G	T	P	L	S	R	A	D	L	R	A	V	N	I	N	L	C
Template Known Secondary structure											T	T	S					T					T	G	G	G	B	T	T	S		G	G	G																					T	T	S	S	S						S		T	T								T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.
		553	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	T	V	A	E	K	E	D	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	M	C	V	I	L	S	A	N	D	K
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		798	.	800	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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