Job Description P76007 Confidence 99.94% Date Thu Jan 5 12:17:17 GMT 2012 Rank 1 Aligned Residues 341 % Identity 14% Template c1zcdA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa Resolution 3.45 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	I	L	V	T	S	S	I	L	L	S	S	F	S	S	R	L	G	I	P	I	L	V	I	F	L	A	I	G	M	L	A	G	V	D	G	V	G	G	I	P	F	D	N	Y	P	F	A	Y	M	V	S	N	L	A	L	A	I	I	L	L	D	G	G	M	R	T	Q	A	S	S	F	R	V	A	L	G	P
Query Conservation
Alig confidence																																																	.	.
Template Conservation																																																	.	.
Template Sequence		S	G	G	I	I	L	I	I	A	A	I	L	A	M	I	M	A	N	S	G	A	T	S	G	W	Y	H	D	F	L	E	T	P	V	Q	L	R	V	G	S	L	E	I	N	K	N	M	.	.	L	L	W	I	N	D	A	L	M	A	V	F	F	L	L	V	G	L	E	V	K	R	E	L	M	Q	G	S	L	A	S
Template Known Secondary structure																					S	S	S								T	T								T	T								.	.																										S	T	T	T	S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.																																.	.
Query SS confidence																									.																																.	.
Query Sequence		A	L	S	L	A	T	L	G	V	L	I	T	S	G	L	T	G	M	M	A	A	W	L	.	F	N	L	D	L	I	E	G	L	L	I	G	A	I	V	G	S	T	D	A	A	A	V	F	S	L	L	G	G	K	G	.	.	L	N	E	R	V	G	S	T	L	E	I	E	S	G	S	N	D	P	M	A	V	F	L
Query Conservation																									.																																.	.
Alig confidence																									.																																.	.
Template Conservation
Template Sequence		L	R	Q	A	A	F	P	V	I	A	A	I	G	G	M	I	V	P	A	L	L	Y	L	A	F	N	Y	A	D	P	I	T	R	E	G	W	A	I	P	A	A	T	D	I	A	F	A	L	G	V	L	A	L	L	G	S	R	V	P	L	A	L	K	I	F	L	M	A	L	A	I	I	D	D	L	G	A	I	I	I
Template Known Secondary structure		T	T	T	S											T	T	T	T					G	G	G			S	S	T	T					T	S	S	S	S													S	S		S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	T	L	I	A	M	I	Q	H	H	E	S	N	I	S	W	M	F	I	V	D	I	L	Q	Q	F	G	L	G	I	V	I	G	L	G	G	G	Y	L	L	L	Q	M	I	N	R	I	A	L	P	A	G	L	Y	P	L	L	A	L	S	G	G	I	L	I	F	S	L	T	T	A	L	E	G	S	G	I	L	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		I	A	L	F	Y	T	N	D	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	S	L	G	V	A	A	V	A	I	A	V	L	A	V	L	N	L	C	G	A	R	R	T	.	.	.	G	V	Y	I	L	V	G	V	V	L	W	T	A	V	L	K	S	G	V	H	A	T	L	A
Template Known Secondary structure						S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T				T	.	.	.														T	T	T	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180																			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																										.	.	.	.											.
Query SS confidence																										.	.	.	.											.
Query Sequence		V	Y	L	C	G	F	L	L	G	N	R	P	I	R	N	R	Y	G	I	L	Q	N	F	D	.	.	.	.	G	L	A	W	L	A	Q	I	A	M	.	F	L	V	L	G	L	L	V	N	P	S	D	L	L	P	I	A	I	P	A	L	I	L	S	A	W	M	I	F	F	A	R	P	L	S	V	F	A	G	L	L
Query Conservation																										.	.	.	.											.
Alig confidence																										.	.	.	.											.
Template Conservation
Template Sequence		G	V	I	V	G	F	F	I	P	L	K	E	K	H	G	R	S	P	A	K	R	L	E	H	V	L	H	P	W	V	A	Y	L	I	L	P	L	F	A	F	A	N	A	G	V	S	L	Q	G	V	T	L	D	G	L	T	S	I	L	P	L	G	I	I	A	G	L	L	I	G	K	P	L	G	I	S	L	F	C	W
Template Known Secondary structure									S				G	G	G	S	S																	T															S	S	S				T					S	S	T	T	T	T						T	T	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		324	.	.										.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.														.
Query SS confidence					.	.	.	.	.	.	.	.	.														.
Query Sequence		P	F	R	.	.	.	.	.	.	.	.	.	G	F	N	L	R	E	R	V	F	I	S	W	V	.	G	L	R	G	A	V	P	I	I	L	A	V	F	P	M	M	A	G	L	E	N	A	R	L	F	F	N	V	A	F	F	V	V	L	V	S	L	L
Query Conservation					.	.	.	.	.	.	.	.	.														.
Alig confidence					.	.	.	.	.	.	.	.	.														.																.	.
Template Conservation																																											.	.
Template Sequence		L	A	L	R	L	K	L	A	H	L	P	E	G	T	T	Y	Q	Q	I	M	V	V	G	I	L	C	G	I	G	F	T	M	S	I	F	I	A	S	L	A	F	.	.	G	S	V	D	P	E	L	I	N	W	A	K	L	G	I	L	V	G	S	I	S
Template Known Secondary structure			T	S	S		T	T	T					S			G	G	G	G	T	T					T	T														S	.	.	T	T	S	S		S	S														T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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