Job Description P24197 Confidence 99.40% Date Thu Jan 5 11:41:08 GMT 2012 Rank 3 Aligned Residues 202 % Identity 12% Template c3bd0D_ PDB info PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii Resolution 3.01 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	Q	A	I	V	V	V	S	A	H	W	F	T	R	G	T	G	V	T	A	M	E	T	P	P	T	I	H	D	F	G	G	F	P	Q	A	L	Y	D	T	H	Y	P	A	P	G	S	P	A	L	A	Q	R	L	V	E	L	L	A	P	I	P	V	T	L	D	K	E	A	W	G	F	D	H	G	S	W	G	V
Query Conservation
Alig confidence																									.	.	.	.	.	.	.														.	.	.	.																									.	.
Template Conservation																									.	.	.	.	.	.	.														.	.	.	.																									.	.
Template Sequence		I	T	R	R	I	F	I	L	G	P	S	H	H	V	P	L	S	R	C	A	L	S	S	.	.	.	.	.	.	.	V	D	I	Y	R	T	P	L	Y	D	L	R	I	.	.	.	.	D	Q	K	I	Y	G	E	L	W	K	T	G	M	F	E	R	M	S	L	Q	T	D	E	D	.	.	E	H	S	I	E	M	H
Template Known Secondary structure		T											S	S	S			S	S					S	.	.	.	.	.	.	.	S	S					S	S					B	.	.	.	.										T	T	T													.	.			T	T	G	G	G
Template Predicted Secondary structure																									.	.	.	.	.	.	.														.	.	.	.																									.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.
		118	.	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.																															.																															.	.	.	.
Query SS confidence							.	.	.	.	.																															.																															.	.	.	.
Query Sequence		L	I	K	M	Y	.	.	.	.	.	P	D	A	D	I	P	M	V	Q	L	S	I	D	S	S	K	P	A	A	W	H	F	E	M	G	R	K	L	A	A	.	L	R	D	E	G	I	M	L	V	A	S	G	N	V	V	H	N	L	R	T	V	K	W	H	G	D	S	S	P	Y	.	.	.	.	P	W	A	T	S
Query Conservation							.	.	.	.	.																															.																															.	.	.	.
Alig confidence							.	.	.	.	.													.																		.																															.	.	.	.
Template Conservation																								.
Template Sequence		L	P	Y	T	A	K	A	M	E	S	H	K	D	E	F	T	I	I	P	V	L	V	.	G	A	L	S	E	S	K	E	Q	E	F	G	K	L	F	S	K	Y	L	A	D	P	S	N	L	F	V	V	S	S	D	F	C	H	W	G	Q	R	F	R	Y	S	Y	Y	D	E	S	Q	G	E	I	Y	R	S	I	E	H
Template Known Secondary structure									T	G	G	G	T	T	S									.		S																		T		T	T													B	G	G	G	T	B					G	G	G	S	S
Template Predicted Secondary structure																								.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.							.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.								.	.
Predicted Secondary structure																																																.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		F	N	E	Y	V	K	A	N	L	T	W	Q	G	P	V	E	Q	H	P	L	V	N	Y	L	D	H	E	G	G	T	L	S	N	P	T	P	E	H	Y	L	P	L	L	Y	V	L	.	.	.	.	.	.	G	A	W	D	G	Q	E	P	I	T	I	P	V	E	G	I	E	M	G	.	.	.	.	.	.	.	S	L
Query Conservation																																																.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.													.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.
Template Sequence		L	D	K	M	G	M	S	I	I	E	Q	L	D	P	V	S	F	S	N	Y	L	K	K	Y	H	N	.	.	.	.	.	.	.	.	T	I	C	G	R	H	P	I	G	V	L	L	N	A	I	T	E	L	Q	K	N	G	M	N	M	S	F	S	F	L	N	Y	A	Q	S	S	Q	C	R	N	W	Q	D	S	S	V
Template Known Secondary structure												T	T															.	.	.	.	.	.	.	.			T	T																T	T	T													S	S				S	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.									.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		255	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	L	S	V	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	A	A	G	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions