Job Description P76576 Confidence 22.77% Date Thu Jan 5 12:24:45 GMT 2012 Rank 139 Aligned Residues 113 % Identity 12% Template c3mkrB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120														.	.	.	.	.	.	.	.	.	130	.	.	.	.	.													.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	E	L	A	Q	Q	F	V	D	K	N	E	L	E	K	A	A	A	Q	L	Q	Q	G	L	A	D	T	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	L	K	A	V	I	N	L	R	L	A	R	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	L	K	Q	A	D	A	A	L
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	Q	L	C	Y	Q	L	T	T	V	G	K	F	E	E	A	V	E	K	F	R	S	I	L	L	S	V	P	L	L	V	V	D	N	K	Q	E	I	A	E	A	Q	Q	L	I	T	I	C	R	E	Y	I	V	G	L	S	M	E	T	E	R	K	K	L	P	K	E	T	L	E	Q	Q	K	R	I	C	E	M	A
Template Known Secondary structure												T	T																G	G	G					S																												T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		1009	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		K	T	L	D	T	I	K	G	E	G	W	A	A	I	.	V	A	D	L	R	G	E	A	L	L	S	K	G	D	K	Q	G	A	R	S	A	W	E	A	G	V	K	S	D	V	T	P	A	L	S	E	M	M	Q	M	K	I	N	N
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		A	Y	F	T	H	S	N	L	Q	P	V	H	M	I	L	V	L	R	T	A	L	N	L	F	F	K	L	K	N	F	R	T	A	A	A	F	A	R	R	L	L	E	L	G	P	K	P	E	V	A	Q	Q	T	R	K	I	L	S	A
Template Known Secondary structure					T	T	S																					T	T	B														T
Template Predicted Secondary structure
Template SS confidence
		1089	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions