Job Description P76213 Confidence 14.40% Date Thu Jan 5 12:20:36 GMT 2012 Rank 42 Aligned Residues 141 % Identity 15% Template c3gr1A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) Resolution 2.80 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		S	F	L	N	D	L	P	T	R	P	G	V	Y	L	F	H	G	E	S	D	T	M	P	L	Y	I	G	K	S	V	N	I	R	S	R	V	L	S	H	L	R	T	P	D	E	A	A	.	.	.	.	.	M	L	R	Q	S	R	R	I	S	W	I	C	T	A	G	E	I	G	A	L	L	L	E	A	R	L	I	K
Query Conservation																																																	.	.	.	.	.
Alig confidence																								.				.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation																								.				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	D	S	L	L	G	Q	E	K	E	R	F	Q	V	L	P	G	R	D	K	M	.	L	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	A	A	Q	N	E	R	D	T	L	W	A	R	Q	V	L	A	R	G	D	Y	D	K	N	A	R	V	I	N	E	N	E	E	N	K	R	I	S	I	W	L	D	T
Template Known Secondary structure							T		S		S		S							T	T	S		.				.	.	.	.	.	.	.	.	.	.	.	.			S	S														T	T		T	T	T
Template Predicted Secondary structure																								.				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.													.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		101			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.													.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure			.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	.	.	Q	Q	P	L	F	N	K	R	L	R	R	N	R	Q	L	C	A	L	Q	L	N	E	K	R	V	D	V	V	Y	A	K	E	V	D	F	S	R	A	P	N	L	F	G	L	F	A	N	.	.	.	.	.	.	.	.	.	.	.	.	R	R	A	A	L	Q	A	L	Q	T	I	A	D	E	Q	K	L	C
Query Conservation			.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.										.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		Y	Y	P	Q	L	A	Y	Y	R	I	H	F	.	D	E	P	R	K	P	V	F	W	L	S	R	Q	R	N	T	M	S	K	K	E	L	E	V	L	S	Q	K	L	R	A	L	M	P	Y	A	D	S	V	N	I	T	L	M	D	D	V	T	A	A	G	Q	A	E	A	G	L	K	Q	Q	A	L	P	Y	S	R	R
Template Known Secondary structure				T	T									.	S	S	T	T	S							T	T	T																				T	T		S																							T	T
Template Predicted Secondary structure														.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	L	L	G	L	E	P	L	S	R	G	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	H	K	G	G	V	T	F	V	I	Q	G	A	L
Template Known Secondary structure				T	T								S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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