 |
| Job Description | P08337 | | Confidence | 96.69% | Date | Thu Jan 5 11:01:08 GMT 2012 |
| Rank | 83 | Aligned Residues | 65 |
| % Identity | 17% | Template | c3p5tE_ |
| PDB info |
PDB header:rna binding protein | Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; |
PDBTitle: cfim25-cfim68 complex
|
| Resolution | 2.70 Å |
|
| | |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | |
|
. | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
. | . | . | . | . | . | . | . | . | 70 | . |
| Predicted Secondary structure | |
|
|  | | | | | | | | |  |
|
|
|
| . | . | | | | | | | |
|
|
|
|
|
|
|
| | | |
|
|
|
|
|
|
|
|
|
|
|  | | | | | | | | | | | |
|
|
| . | . | | | | | | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
M | K | K | L | Q | I | A | V | G | I | I | R | N | E | N | N | . |
. |
E | I | F | I | T | R | R | A | A | D | A | H | M | A | N | K | L | E | F | P | G | G | K | I | E | M | G | E | T | P | E | Q | A | V | V | R | E | L | Q | E | E | V | G | I | . |
. |
T | P | Q | H | F | S | L | F | E | K | L |
| Query Conservation | |
| | |
| |
| | | |
|
| | | | | | . | . | |
|
|
| |
|
| | | | | | | |
| |
| | |
|
|
| |
|
| | |
| | | | |
|
| |
|
| | |
|
|
|
|
| . | . | | | | | | | | | | | |
| Alig confidence | |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
|
|
| . |
|
| |
|
|
|
|
| |
| | |
|
|
|
|
|
|
| | |
| | | . | . | . | . | . | | |
|
|
|
| |
|
| | |
| |
| |
| |
|
|
|
|
| | | |
| | | | | | |
|
|
|
| |
|
| |
|
| Template Sequence | |
M | R | R | T | . |
V | E | G | V | L | I | V | H | E | H | R | L | P | H | V | L | L | L | Q | L | G | T | T | F | . |
. |
. |
. |
. |
F | K | L | P | G | G | E | L | N | P | G | E | D | E | V | E | G | L | K | R | L | M | T | E | I | L | G | V | L | Q | D | W | V | I | D | D | C | I | G | N | W |
| Template Known Secondary structure | |
S | | | | . | | | | | | | | | | T | T | | | | | | | | | | T | T | T | | . | . | . | . | . | | |
| S | | | |
|
| T | T |
|
| | | | | | | | | | | | | |
|
|
|
|
|
| | | | | | | | | |
| Template Predicted Secondary structure | |
|
| | | . | | | | | | | | | |
|
|
|
| | | | | | | |
|
|
| | . | . | . | . | . | | |
|
|
|
| | |
|
|
|
|
| | | | | | | | | | | | |
|
|
|
|
|
| | | | | | | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
76 | . | . | . | |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
