|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
. | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Query Sequence |   |
M | L | Q | V | Y | L | V | R | H | G | E | T | Q | W | N | A | E | R | R | I | Q | G | Q | S | D | S | P | L | T | A | K | G | E | Q | Q | A | M | Q | V | A | T | R | A | K | E | . |
. |
L | G | I | T | H | I | I | S | S | D | L | G | R | T | R | R | T | A | E | I | I | A | Q | A | C | . |
G | C | D | I | I | F | D |
Query Conservation |   |
|   |   |
|   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   | . | . |   |   |   |   |   |
|   |
|
|
|   |   |
|
|   |
|
|
|   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |
|
|
|
|
|
|
|   |   |
|   |   | . | . | . | . |   |   |   |
|   |   |
|
|
|   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|   |
|
|   |
|
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
T | R | H | I | F | L | I | R | H | S | Q | Y | H | V | D | G | S | . |
. |
. |
. |
L | E | K | D | R | T | L | T | P | L | G | R | E | Q | A | E | L | T | G | L | R | L | A | S | L | G | L | K | F | N | K | I | V | H | S | S | M | T | R | A | I | E | T | T | D | I | I | S | R | H | L | P | G | V | C | K | V | S | T |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
| B |
| T | T |
| S | . | . | . | . | S | G | G | G |
|
| B |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
|
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | S | T | T |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
97 | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | |
|
|
|
. | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
  |
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | R | L | R | E | L | N | M | G | V | L | E | K | R | H | I | D | S | L | T | E | E | E | E | N | W | R | R | Q | L | V | N | G | T | V | D | G | R | I | P | E | G | E | S | M | Q | E | L | S | D | R | V | N | A | A | L | E | S | C | R | D | L | P | Q | G | S | R | P | L | L | V | S | H | G | I | A | L | G | C | L |
Query Conservation |   |
  |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |
Template Sequence |   |
D | L | L | R | E | G | A | K | P | E | A | V | Q | Y | Y | E | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | A | R | I | E | A | A | F | R | N | Y | I | H | R | A | D | . |
. |
A | R | Q | E | E | D | S | Y | E | I | F | I | C | H | A | N | V | I | R | Y | I |
Template Known Secondary structure |   |
G | G | G | S |
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| . | . | T | T |
|
| S |
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | |
|
. | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . |
  |
  |   |
158 | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | S | T | I | L | G | L | P | A | W | A | E | R | R | L | R | L | R | N | C | S | I | S | R | V | D | Y | Q | E | S | L | W | L | A | S | G | W | V | V | E | T | A | G | D | I | S | H | L | D | A | P | A | L |
Query Conservation |   |
  |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   | . | . | . | . |
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |   |   |
Template Sequence |   |
V | C | R | A | L | Q | F | P | P | E | G | W | L | R | L | S | L | N | N | G | S | I | T | H | L | V | I | R | P | N | . |
. |
. |
. |
G | R | V | A | L | R | T | L | G | D | T | G | F | M | P | P | D | K | I |
Template Known Secondary structure |   |
 |  |  |  | T | T |
|
| T | T | G | G | G | G |
|
|
|
| T | T |
|  |  |  |  |  |  |
| T | T | . | . | . | . | S |
|  |  |  |  |  |  |  |  |
| T | T | S |
| G | G | G |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
238 | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | |
|
|
|
. | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . |
  |