|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Q | V | Y | L | V | R | H | G | E | T | Q | W | N | A | E | R | R | I | Q | G | Q | S | D | S | P | L | T | A | K | G | E | Q | Q | A | M | Q | V | A | T | R | A | K | E | L | G | I | T | H | I | I | S | S | D | L | G | R | T | R | R | T | A | E | I | I | A | Q | A | C | G | C | D | I | I | F | D | S | R | L | R |
Query Conservation |   |
  |   |
|   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |
|   |
|
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
Template Sequence |   |
X | H | A | L | Y | I | T | H | P | Q | V | K | I | D | P | A | V | P | V | P | . |
. |
. |
E | W | G | L | S | E | R | G | A | E | R | A | R | E | A | S | R | L | P | W | A | K | A | L | R | R | I | V | S | S | A | E | T | K | A | I | E | T | A | H | X | L | A | E | T | S | G | A | A | I | E | I | I | E | A | X | H |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|
|
| B |
|
|
| S | S | S |
| G | G | . | . | . | G |
|
| B |
|  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  | T |
|
|  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  | T | T | T | T |
|
|  |  |  |  |
| G | G | G |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
|
|
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | |
. | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | L | N | M | G | V | L | E | K | R | H | I | D | S | L | T | E | E | E | E | N | W | R | R | Q | L | V | N | G | T | V | D | G | R | I | P | E | G | E | S | M | Q | E | L | S | D | R | V | N | A | A | L | E | S | C | R | D | L | P | Q | . |
G | S | R | P | L | L | V | S | H | G | I | A | L | G | C | L | V | S | T |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   | . |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |
|
|
|
|   |   |
|   |   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   |
Template Sequence |   |
E | N | D | R | S | A | T | G | F | L | P | P | P | E | F | E | K | A | A | D | W | F | F | A | H | . |
. |
. |
. |
. |
P | E | E | S | F | Q | G | W | E | R | A | I | D | A | Q | A | R | I | V | E | A | V | K | A | V | L | D | R | H | D | A | R | Q | P | I | A | F | V | G | H | G | G | V | G | T | L | L | K | C | H |
Template Known Secondary structure |   |
|
|
|
| G | G | G |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | T | T | S |
| S | T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| T | T | S |
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . |
  |
  |   |
161 | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | |
. | . | . | . | . | 190 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  | . |  |
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | L | G | L | P | A | W | A | E | R | R | L | R | L | R | N | C | S | I | S | R | V | D | Y | . |
Q | E | S | L | W | L | A | S | G | W | V | V |
Query Conservation |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |   | . | . |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | E | G | R | G | I | S | R | . |
. |
S | Q | P | A | G | G | G | N | L | F | R | F | S | I | A | E | F | S | A | A | A | T | C | D | W | T | A |
Template Known Secondary structure |   |
 |  | T |
|
|
|
|
| . | . |
|
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
174 | . | . | . | . | . | 180 | . | |
|
. | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
  |