Phyre 2 alignment of P30235 with d1bx4a

Job Description P30235
Confidence 100.00% Date Thu Jan 5 11:46:18 GMT 2012

Rank 23 Aligned Residues 295

% Identity 15% Template d1bx4a_

SCOP info Ribokinase-like Ribokinase-like Ribokinase-like

Resolution 1.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.																					.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																						.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																						.	.	.	.
Query Sequence	E	K	D	Y	V	V	I	I	G	S	A	N	I	D	V	A	G	Y	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	L	N	Y	A	D	S	.	N	P	G	K	I	K	F	T	P	G	G	V	G	R	N	I	A	Q	N	L	A	.	.	.	.	L	L	G	N	K	A
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																						.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																						.	.	.	.
Template Conservation
Template Sequence	R	E	N	I	L	F	G	M	G	N	P	L	L	D	I	S	A	V	V	D	K	D	F	L	D	K	Y	S	L	K	P	N	D	Q	I	L	A	E	D	K	H	K	E	L	F	D	E	L	V	K	K	F	K	V	E	Y	H	A	G	G	S	T	Q	N	S	I	K	V	A	Q	W	M	I	Q	Q	P	H	K	A	A
Template Known Secondary structure		T	T																								T	T			S	S							G	G	G											S																							S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

	58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence	W	L	L	S	A	V	G	S	D	F	Y	G	Q	S	L	L	T	Q	T	N	Q	S	G	V	Y	V	D	K	C	L	I	V	P	G	E	N	T	S	S	Y	L	S	L	L	D	N	T	G	E	M	L	V	A	I	N	D	M	N	I	S	N	A	I	T	A	E	.	Y	L	A	Q	H	G	E	F	I	Q	R	A	K
Query Conservation																																																																			.
Alig confidence																														.																																					.
Template Conservation																														.
Template Sequence	T	F	F	G	C	I	G	I	D	K	F	G	E	I	L	K	R	K	A	A	E	A	H	V	D	A	H	Y	Y	.	E	Q	N	E	Q	P	T	G	T	C	A	A	C	I	T	G	D	N	R	S	L	I	A	N	L	A	A	A	N	C	Y	K	K	E	K	H	L	D	L	E	K	N	W	M	L	V	E	K	A	R
Template Known Secondary structure								S	S													T	T							.			S	S	S											T	T									G	G	G	G	G			G	G	G	T	T	T	S											S
Template Predicted Secondary structure																														.
Template SS confidence
	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

	137	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.																									.	.	.	.
Query SS confidence							.	.	.	.	.																									.	.	.	.
Query Sequence	V	I	V	A	D	C	.	.	.	.	.	N	I	S	E	E	A	L	A	W	I	L	D	N	A	A	N	V	P	V	F	V	D	P	V	.	.	.	.	S	A	W	K	C	V	K	V	R	D	R	L	N	Q	I	H	T	L	K	P	N	R	L	E	A	E	T	L	S	G	I	A	L	S	G	R	E	D	V	A	K
Query Conservation							.	.	.	.	.																									.	.	.	.
Alig confidence							.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence	V	C	Y	I	A	G	F	F	L	T	V	S	P	E	S	V	L	K	V	A	H	H	A	S	E	N	N	R	I	F	T	L	N	L	S	A	P	F	I	S	Q	F	Y	K	E	S	L	M	K	V	M	P	Y	V	D	I	L	F	G	N	E	T	E	A	A	T	F	A	R	E	Q	G	F	E	T	K	D	I	K	E
Template Known Secondary structure						G	G	G	G	G	T															T	T									S							T								G	G	G		S																T	T
Template Predicted Secondary structure
Template SS confidence
	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

	208	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																														.	.
Query SS confidence					.	.	.	.	.	.																														.	.
Query Sequence	V	A	A	W	.	.	.	.	.	.	F	H	Q	H	G	L	N	R	L	V	L	S	M	G	G	D	G	V	Y	Y	S	D	I	S	G	E	S	G	W	.	.	S	A	P	I	K	T	N	V	I	N	V	T	G	A	G	D	A	M	M	A	G	L	A	S	C	W	V	D	G	M	P	F	A	E	S	V	R	F	A
Query Conservation					.	.	.	.	.	.																														.	.
Alig confidence					.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence	I	A	K	K	T	Q	A	L	P	K	M	N	S	K	R	Q	R	I	V	I	F	T	Q	G	R	D	D	T	I	M	A	T	E	S	E	V	T	A	F	A	V	L	D	Q	D	Q	K	E	I	I	D	T	N	G	A	G	D	A	F	V	G	G	F	L	S	Q	L	V	S	D	K	P	L	T	E	C	I	R	A	G
Template Known Secondary structure							T	S			S		T	T	S									T	T								S	S													T	T																				T	T	T
Template Predicted Secondary structure
Template SS confidence
	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	G	C	S	S	M	A	L	S	C	E	Y	T	N	N	P	D	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence	H	Y	A	A	S	I	I	I	R	R	T	G	C	T	F	P	E	K	P
Template Known Secondary structure								T	T	S	S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
	324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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