Job Description P30235 Confidence 100.00% Date Thu Jan 5 11:46:18 GMT 2012 Rank 21 Aligned Residues 277 % Identity 17% Template c3i3yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae Resolution 2.15 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		Y	V	V	I	I	G	S	A	N	I	D	V	A	G	Y	S	H	E	S	L	N	Y	A	D	S	.	N	P	G	K	I	K	F	T	P	G	G	V	G	R	N	I	A	Q	N	L	A	L	L	G	N	K	A	W	L	L	S	A	V	G	S	D	F	Y	G	Q	S	L	L	T	Q	T	N	Q	S	G	V	Y	V	D
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		R	V	Y	V	T	G	N	I	T	V	D	E	T	W	S	I	P	D	I	P	K	K	G	A	S	I	H	G	V	K	V	S	Q	D	I	G	G	K	G	A	N	Q	A	I	I	L	S	R	C	G	I	E	T	R	L	I	A	A	T	G	N	D	S	N	G	A	W	I	R	Q	Q	I	K	N	E	P	L	X	L	L
Template Known Secondary structure																		S	S				T	T																										T	T											S	S											T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	C	L	I	V	P	G	E	N	T	S	S	Y	L	S	L	L	D	N	T	G	E	M	L	V	A	I	N	D	M	N	I	S	N	A	I	T	A	E	Y	L	A	Q	H	G	E	F	I	Q	R	A	K	V	I	V	A	D	C	N	I	S	E	E	A	L	A	W	I	L	D	N	A	A	N	V	P	V	F	V	D
Query Conservation
Alig confidence									.																		.	.	.	.
Template Conservation									.																		.	.	.	.
Template Sequence		P	D	G	H	F	N	Q	.	H	S	D	T	S	I	I	L	A	D	G	N	A	I	I	T	T	.	.	.	.	T	A	A	A	D	T	F	S	L	D	E	X	I	P	H	X	A	D	A	V	A	G	D	I	L	L	Q	Q	G	N	F	S	L	D	K	T	R	A	L	F	Q	Y	A	R	S	R	G	X	T	T	V
Template Known Secondary structure		S	S	S			S	S	.																		.	.	.	.		T	T	T	T	T							G	G	G	G	T	T			T	T							S		S															T	T
Template Predicted Secondary structure									.																		.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	S	A	W	K	C	V	K	V	R	D	R	L	N	Q	I	H	T	L	K	P	N	R	L	E	A	E	T	L	S	G	I	A	L	S	G	R	E	D	V	A	K	V	A	A	W	F	H	Q	H	G	L	N	R	L	V	L	S	M	G	G	D	G	V	Y	Y	S	D	I	S	G	E	S	G	W	S	A	P	I
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		F	N	P	S	P	V	N	P	D	F	C	H	L	W	P	L	I	D	I	A	V	V	N	E	S	E	A	E	L	L	Q	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	K	T	L	V	I	T	Q	G	A	A	G	A	W	L	V	Q	.	E	G	Q	R	Q	F	C	P	A	V
Template Known Secondary structure						S			G	G	G	G	G		G	G	G		S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S							T	T	S						S	.	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.																			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		K	T	N	V	I	N	V	T	G	A	G	D	A	M	M	A	G	L	A	S	C	W	V	D	G	M	P	.	.	F	A	E	S	V	R	F	A	Q	G	C	S	S	M	A	L	S	C	E	Y	T	N	N	P	D	L	S	I	A	N	V	I	S	L	V
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		P	A	E	A	L	D	T	T	G	A	G	D	T	F	L	A	V	X	L	A	S	A	L	L	R	G	V	A	P	D	A	L	A	L	A	H	A	S	R	A	A	A	I	T	V	S	R	R	G	T	L	S	A	F	P	G	S	R	E	L	A	A	L	L
Template Known Secondary structure						S			T	T																T	T	S		S																T	T	S		S	S	G	G	G	S										T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions