Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	K	T	L	L	D	G	P	G	R	V	L	E	S	V	Y	P	R	F	L	V	D	L	A	Q	G	D	D	A	R	L	P	Q	A	H	Q	Q	Q	F	R	E	R	L	M	Q	E	L	L	S	R	V	Q	L	Q	T	W	T	N	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																										?	?	?	?	?	?	?								?	?		?						?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	M	L	N	A	P	L	S	L	R	L	T	L	V	E	K	L	A	S	M	L	D	P	G	H	L	A	L	T	Q	I	A	Q	H	L	A	L	L	Q	K	M	D	H	R	Q	H	S	A	F	P	E	L	P	Q	Q	I	A	A	L	Y
Secondary structure
SS confidence
Disorder		?	?	?																	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	W	F	S	A	R	C	R	W	K	E	K	A	L	T	Q	R	G	L	L	V	Q	A	G	D	Q	S	E	Q	I	F	T	R	W	R	A	G	A	Y	N	A	W	S	L	P	G	R	C	F	I	V	L	E	E	L	R	W	G	A	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	D	A	C	R	L	G	S	P	Q	A	V	A	L	L	L	G	D	L	L	E	K	A	T	Q	H	L	A	E	S	I	N	A	A	P	T	T	R	H	Y	Y	H	Q	W	F	A	S	S	T	V	P	T	G	G	E	H	A	D	F	L
Secondary structure
SS confidence
Disorder																																?		?			?													?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Sequence		S	W	L	G	K	W	T	T	A	D	K	Q	P	V	C	W	S	V	T	Q	R	W	Q	T	V	A	L	G	M	P	R	L	C	S	A	Q	R	L	A	G	A	M	L	E	E	I	F	S	V	N	L	A
Secondary structure
SS confidence
Disorder																										?			?			?	?	?	?														?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ku8 chain A Region: 120 - 150 Aligned: 31 Modelled: 31 Confidence: 50.0% Identity: 13% PDB header:toxin/isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: ccdbvfi:gyra14ec Phyre2 PDB 3jza chain B Region: 163 - 218 Aligned: 53 Modelled: 56 Confidence: 49.8% Identity: 25% PDB header:transport protein Chain: B: PDB Molecule:uncharacterized protein drra; PDBTitle: crystal structure of human rab1b in complex with the gef domain of2 drra/sidm from legionella pneumophila Phyre2 PDB 1vma chain A domain 1 Region: 39 - 117 Aligned: 78 Modelled: 79 Confidence: 48.5% Identity: 15% Fold: Four-helical up-and-down bundle Superfamily: Domain of the SRP/SRP receptor G-proteins Family: Domain of the SRP/SRP receptor G-proteins Phyre2 PDB 1x75 chain A domain 1 Region: 120 - 150 Aligned: 31 Modelled: 31 Confidence: 48.2% Identity: 13% Fold: Type II DNA topoisomerase Superfamily: Type II DNA topoisomerase Family: Type II DNA topoisomerase Phyre2 PDB 3n6o chain B Region: 163 - 221 Aligned: 56 Modelled: 59 Confidence: 48.2% Identity: 23% PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide exchange factor; PDBTitle: crystal structure of the gef and p4m domain of drra/sidm from2 legionella pneumophila Phyre2 PDB 1n9p chain A Region: 263 - 283 Aligned: 20 Modelled: 20 Confidence: 42.0% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Cytoplasmic domain of inward rectifier potassium channel Phyre2 PDB 3iz6 chain T Region: 265 - 276 Aligned: 12 Modelled: 12 Confidence: 37.7% Identity: 58% PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein s21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 2xzn chain Z Region: 263 - 276 Aligned: 14 Modelled: 14 Confidence: 34.5% Identity: 21% PDB header:ribosome Chain: Z: PDB Molecule:rps21e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Phyre2 PDB 3l0m chain A Region: 163 - 221 Aligned: 56 Modelled: 59 Confidence: 30.0% Identity: 23% PDB header:protein binding Chain: A: PDB Molecule:drra; PDBTitle: crystal structure of rab1-activation domain and p4m domain of2 sidm/drra from legionella Phyre2 PDB 3izb chain T Region: 263 - 276 Aligned: 14 Modelled: 14 Confidence: 29.5% Identity: 57% PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein rps21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 1baz chain B Region: 18 - 48 Aligned: 31 Modelled: 31 Confidence: 28.5% Identity: 19% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 2pgd chain A domain 1 Region: 99 - 162 Aligned: 48 Modelled: 48 Confidence: 28.1% Identity: 21% Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like Family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain Phyre2 PDB 1jek chain A Region: 105 - 138 Aligned: 34 Modelled: 34 Confidence: 27.8% Identity: 15% PDB header:viral protein Chain: A: PDB Molecule:env polyprotein; PDBTitle: visna tm core structure Phyre2 PDB 1z3x chain A Region: 145 - 184 Aligned: 38 Modelled: 40 Confidence: 27.1% Identity: 11% PDB header:transferase activator Chain: A: PDB Molecule:putative cytidyltransferase; PDBTitle: structure of gun4 from thermosynechococcus elongatus Phyre2 PDB 3euh chain B Region: 46 - 128 Aligned: 82 Modelled: 83 Confidence: 25.7% Identity: 13% PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of the muke-mukf complex Phyre2 PDB 1hhs chain A Region: 159 - 209 Aligned: 43 Modelled: 51 Confidence: 24.9% Identity: 28% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: dsRNA phage RNA-dependent RNA-polymerase Phyre2 PDB 3p8c chain D Region: 91 - 141 Aligned: 51 Modelled: 51 Confidence: 24.1% Identity: 12% PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex Phyre2 PDB 3l0i chain A Region: 163 - 248 Aligned: 83 Modelled: 86 Confidence: 23.1% Identity: 19% PDB header:protein binding/protein transport Chain: A: PDB Molecule:drra; PDBTitle: complex structure of sidm/drra with the wild type rab1 Phyre2 PDB 2k37 chain A Region: 160 - 184 Aligned: 25 Modelled: 25 Confidence: 23.0% Identity: 28% PDB header:photosynthesis Chain: A: PDB Molecule:chlorosome protein a; PDBTitle: csma Phyre2 PDB 1myk chain A Region: 18 - 52 Aligned: 35 Modelled: 35 Confidence: 22.6% Identity: 17% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 1 c3ku8A_ 2 c3jzaB_ 3 d1vmaa1 4 d1x75a1 5 c3n6oB_ 6 d1n9pa_ 7 c3iz6T_ 8 c2xznZ_ 9 c3l0mA_ 10 c3izbT_ 11 d1bazb_ 12 d2pgda1 13 c1jekA_ 14 c1z3xA_ 15 c3euhB_ 16 d1hhsa_ 17 c3p8cD_ 18 c3l0iA_ 19 c2k37A_ 20 d1myka_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ku8A_ 50.0 13 PDB header:toxin/isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: ccdbvfi:gyra14ec 2 c3jzaB_ 49.8 25 PDB header:transport protein Chain: B: PDB Molecule:uncharacterized protein drra; PDBTitle: crystal structure of human rab1b in complex with the gef domain of2 drra/sidm from legionella pneumophila 3 d1vmaa1 48.5 15 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 4 d1x75a1 48.2 13 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 5 c3n6oB_ 48.2 23 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide exchange factor; PDBTitle: crystal structure of the gef and p4m domain of drra/sidm from2 legionella pneumophila 6 d1n9pa_ 42.0 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 7 c3iz6T_ 37.7 58 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein s21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 8 c2xznZ_ 34.5 21 PDB header:ribosome Chain: Z: PDB Molecule:rps21e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 9 c3l0mA_ 30.0 23 PDB header:protein binding Chain: A: PDB Molecule:drra; PDBTitle: crystal structure of rab1-activation domain and p4m domain of2 sidm/drra from legionella 10 c3izbT_ 29.5 57 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein rps21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 11 d1bazb_ 28.5 19 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 12 d2pgda1 28.1 21 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 13 c1jekA_ 27.8 15 PDB header:viral protein Chain: A: PDB Molecule:env polyprotein; PDBTitle: visna tm core structure 14 c1z3xA_ 27.1 11 PDB header:transferase activator Chain: A: PDB Molecule:putative cytidyltransferase; PDBTitle: structure of gun4 from thermosynechococcus elongatus 15 c3euhB_ 25.7 13 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of the muke-mukf complex 16 d1hhsa_ 24.9 28 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:dsRNA phage RNA-dependent RNA-polymerase 17 c3p8cD_ 24.1 12 PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex 18 c3l0iA_ 23.1 19 PDB header:protein binding/protein transport Chain: A: PDB Molecule:drra; PDBTitle: complex structure of sidm/drra with the wild type rab1 19 c2k37A_ 23.0 28 PDB header:photosynthesis Chain: A: PDB Molecule:chlorosome protein a; PDBTitle: csma 20 d1myka_ 22.6 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 21 d1baza_ not modelled 22.5 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 22 c3tbiA_ not modelled 21.9 16 PDB header:transcription Chain: A: PDB Molecule:rna polymerase-associated protein gp33; PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain 23 d1bdta_ not modelled 19.7 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 24 c2e4fA_ not modelled 18.7 27 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 25 d1i6za_ not modelled 17.9 22 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 26 d2crna1 not modelled 16.6 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 27 d1gaka_ not modelled 15.8 27 Fold:Fertilization protein Superfamily:Fertilization protein Family:Fertilization protein 28 d1u9pa1 not modelled 15.4 13 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 29 c2xi7B_ not modelled 14.9 23 PDB header:transferase Chain: B: PDB Molecule:rna polymerase l; PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein 30 c2xi5D_ not modelled 14.7 23 PDB header:transferase Chain: D: PDB Molecule:rna polymerase l; PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein 31 c1wncE_ not modelled 14.2 20 PDB header:viral protein Chain: E: PDB Molecule:e2 glycoprotein; PDBTitle: crystal structure of the sars-cov spike protein fusion core 32 d1pgja1 not modelled 13.3 13 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 33 c3hfeC_ not modelled 12.6 25 PDB header:transport protein Chain: C: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1; PDBTitle: a trimeric form of the kv7.1 a domain tail 34 d1z3xa2 not modelled 12.5 11 Fold:GUN4-like Superfamily:GUN4-like Family:GUN4-like 35 d2id1a1 not modelled 12.2 18 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like 36 c2vkzH_ not modelled 11.8 15 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 37 d1m50a_ not modelled 11.5 35 Fold:Bacteriochlorophyll A protein Superfamily:Bacteriochlorophyll A protein Family:Bacteriochlorophyll A protein 38 c2kz3A_ not modelled 11.3 29 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 39 d1mylb_ not modelled 10.8 16 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 40 c1qgbA_ not modelled 10.3 10 PDB header:cell adhesion Chain: A: PDB Molecule:protein (fibronectin); PDBTitle: solution structure of the n-terminal f1 module pair from2 human fibronectin 41 c1y6iA_ not modelled 10.1 8 PDB header:ligand binding protein Chain: A: PDB Molecule:mg-chelatase cofactor gun4; PDBTitle: synechocystis gun4 42 c2ieqC_ not modelled 9.6 17 PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein 43 c2xsbA_ not modelled 9.5 17 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: ogoga pugnac complex 44 d1iiea_ not modelled 9.5 25 Fold:Class II MHC-associated invariant chain ectoplasmic trimerization domain Superfamily:Class II MHC-associated invariant chain ectoplasmic trimerization domain Family:Class II MHC-associated invariant chain ectoplasmic trimerization domain 45 d1y6ia2 not modelled 8.9 8 Fold:GUN4-like Superfamily:GUN4-like Family:GUN4-like 46 c3bj4B_ not modelled 8.8 25 PDB header:signaling protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction 47 c2crnA_ not modelled 8.8 11 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 48 c2gr7C_ not modelled 8.7 11 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 49 d2gr7a1 not modelled 8.7 11 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 50 d2cpwa1 not modelled 8.6 4 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 51 c2kfeA_ not modelled 8.2 14 PDB header:antimicrobial protein Chain: A: PDB Molecule:meucin-24; PDBTitle: solution structure of meucin-24 52 c2kppA_ not modelled 8.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0431 protein; PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112 53 d2veaa3 not modelled 7.6 31 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:BphP N-terminal domain-like 54 d1a8ra_ not modelled 7.5 40 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 55 c3ejhB_ not modelled 7.5 11 PDB header:cell adhesion Chain: B: PDB Molecule:fibronectin; PDBTitle: crystal structure of the fibronectin 8-9fni domain pair in complex2 with a type-i collagen peptide 56 d3cx5h1 not modelled 7.4 50 Fold:Single transmembrane helix Superfamily:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 57 c3swfA_ not modelled 7.4 11 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 58 c3upsA_ not modelled 7.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:iojap-like protein; PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis 59 c2cpwA_ not modelled 7.2 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 60 c2rkzD_ not modelled 6.9 14 PDB header:cell adhesion Chain: D: PDB Molecule:fibronectin; PDBTitle: crystal structure of the second and third fibronectin f12 modules in complex with a fragment of staphylococcus3 aureus fnbpa-1 61 d1czan4 not modelled 6.9 100 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 62 d1o57a1 not modelled 6.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:N-terminal domain of Bacillus PurR 63 c3mmyF_ not modelled 6.8 56 PDB header:nuclear protein Chain: F: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 64 d1epua_ not modelled 6.6 9 Fold:Sec1/munc18-like (SM) proteins Superfamily:Sec1/munc18-like (SM) proteins Family:Sec1/munc18-like (SM) proteins 65 c2dd4H_ not modelled 6.5 16 PDB header:hydrolase Chain: H: PDB Molecule:thiocyanate hydrolase beta subunit; PDBTitle: thiocyanate hydrolase (scnase) from thiobacillus thioparus2 recombinant apo-enzyme 66 c2dagA_ not modelled 6.4 11 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 67 c3iwfA_ not modelled 6.3 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator rpir family; PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a 68 d1txka1 not modelled 6.3 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 69 d2oo3a1 not modelled 6.1 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:LPG1296-like 70 d3bqoa1 not modelled 6.0 21 Fold:Telomeric repeat binding factor (TRF) dimerisation domain Superfamily:Telomeric repeat binding factor (TRF) dimerisation domain Family:Telomeric repeat binding factor (TRF) dimerisation domain 71 d1whca_ not modelled 5.9 7 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 72 d1dn1a_ not modelled 5.7 18 Fold:Sec1/munc18-like (SM) proteins Superfamily:Sec1/munc18-like (SM) proteins Family:Sec1/munc18-like (SM) proteins 73 d1bg3a4 not modelled 5.6 100 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 74 c2y9xC_ not modelled 5.5 13 PDB header:oxidoreductase Chain: C: PDB Molecule:polyphenol oxidase; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone 75 c1aq5C_ not modelled 5.1 19 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0