Job Description P0CE44 Confidence 99.83% Date Wed Jan 25 15:20:35 GMT 2012 Rank 3 Aligned Residues 368 % Identity 14% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	Y	S	L	G	D	V	A	N	N	F	A	F	A	M	G	A	L	F	L	L	S	Y	Y	T	D	V	A	G	V	G	A	A	A	A	G	T	M	L	L	L	V	R	V	F	D	A	F	A	D	V	F	A	G	R	V	V	D	S	V	N	T	R	W	G	K	F	R	P	F	L	L	F	G	T	A	P	L
Query Conservation
Alig confidence																										.																																										.	.	.	.	.
Template Conservation																										.																																										.	.	.	.	.
Template Sequence		L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	.	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	.	.	.	.	.	V	I	L	V	G	M	S	I	F
Template Known Secondary structure																										.			T	T	S	S	S	T	T																			T	T						T	T	S					.	.	.	.	.
Template Predicted Secondary structure																										.																																										.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	F	S	V	L	V	F	W	V	L	T	D	W	S	H	G	S	K	V	V	Y	A	Y	L	T	Y	M	G	L	G	L	C	Y	S	L	V	N	I	P	Y	G	S	L	A	T	A	M	T	Q	Q	P	Q	S	R	A	R	L	G	A	A	R	G	I	A	A	S	L	T	F	V	C	L	A	F	L	I	G	P	S
Query Conservation
Alig confidence													.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		M	L	A	T	L	V	A	V	T	T	S	.	.	.	.	.	.	.	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D
Template Known Secondary structure													.	.	.	.	.	.	.																																	T	S	S			S																							S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.								.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	N	S	S	P	E	E	M	V	S	V	Y	H	F	W	T	I	V	L	A	I	A	G	M	V	L	Y	F	I	C	F	K	S	T	R	E	N	V	V	R	I	V	A	Q	P	S	L	N	I	S	L	Q	T	L	K	R	N	R	P	L	F	M	L	C	I	G	A	L	C	V	L	I	S	T	F	A	V	S	A
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.
Template Sequence		T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	.	.	.	.	.	.	.	.	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A
Template Known Secondary structure																											S	S	.	.	.	.	.	.	.	.				S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		S	S	L	F	Y	V	R	Y	V	L	N	D	T	G	L	F	T	V	L	V	L	V	Q	N	L	V	G	T	V	A	S	A	P	L	V	P	G	M	V	A	R	I	G	K	K	N	T	F	L	I	G	A	L	L	G	T	C	G	Y	L	L	F	F	W	V	S	.	V	W	S	L	P	V	A	L	V	A	L	A	I
Query Conservation																																																																				.
Alig confidence																																																																				.
Template Conservation
Template Sequence		C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L
Template Known Secondary structure				S		S	S																	T														T	T	T	T																T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	I	G	Q	G	V	T	M	T	V	M	W	A	L	E	A	D	T	V	E	Y	G	E	Y	L	T	G	V	R	I	E	G	L	T	Y	S	L	F	S	F	T	R	K	C	G	Q	A	I	G	G	S	I	P	A	F	I	L	G	L	S	G	Y	I	A	N	Q	V	Q	T	P	E	V	I	M	G	I	R	T	S
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	F	.	.	.	.	.	.	.	.	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	G	S	L	G	L	L
Template Known Secondary structure									T	S	S	T	T						T					.	.	.	.	.	.	.	.																					S	T	T		T								.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330									.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.													.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	L	V	P	C	G	F	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	T	L	M	G	L	L	I	V	L
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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