Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	S	L	V	V	P	G	L	D	T	L	R	Q	W	L	D	D	L	G	M	S	F	F	E	C	D	N	C	Q	A	L	H	L	P	H	M	Q	N	F	D	G	V	F	D	A	K	I	D	L	I	D	N	T	I	L	F	S	A	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																																?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	E	V	R	P	S	A	V	L	P	L	A	A	D	L	S	A	I	N	A	S	S	L	T	V	K	A	F	L	D	M	Q	D	D	N	L	P	K	L	V	V	C	Q	S	L	S	V	M	Q	G	V	T	Y	E	Q	F	A	W	F	V
Secondary structure
SS confidence
Disorder		?	?	?	?										?	?	?		?	?																								?	?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Sequence		R	Q	S	E	E	Q	I	S	M	V	I	L	E	A	N	A	H	Q	L	L	L	P	T	D	D	E	G	Q	N	N	V	T	E	N	Y	F	L	H
Secondary structure
SS confidence
Disorder																											?	?	?	?		?	?	?	?	?		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3sf4 chain F Region: 10 - 21 Aligned: 12 Modelled: 12 Confidence: 63.7% Identity: 33% PDB header:signaling protein/protein binding Chain: F: PDB Molecule:protein inscuteable homolog; PDBTitle: crystal structure of the complex between the conserved cell polarity2 proteins inscuteable and lgn Phyre2 PDB 2gcf chain A Region: 26 - 77 Aligned: 52 Modelled: 52 Confidence: 51.6% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form Phyre2 PDB 3cxj chain B Region: 7 - 131 Aligned: 119 Modelled: 124 Confidence: 43.4% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus Phyre2 PDB 2ggp chain B domain 1 Region: 19 - 77 Aligned: 59 Modelled: 59 Confidence: 35.2% Identity: 19% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1yg0 chain A Region: 26 - 77 Aligned: 52 Modelled: 52 Confidence: 35.1% Identity: 12% PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori Phyre2 PDB 1sb6 chain A Region: 26 - 77 Aligned: 50 Modelled: 52 Confidence: 33.4% Identity: 16% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2kt2 chain A Region: 26 - 77 Aligned: 52 Modelled: 52 Confidence: 33.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase Phyre2 PDB 2hfv chain A domain 1 Region: 12 - 55 Aligned: 40 Modelled: 44 Confidence: 29.6% Identity: 15% Fold: Ferredoxin-like Superfamily: GlnB-like Family: RPA1041-like Phyre2 PDB 2a2j chain A domain 1 Region: 9 - 59 Aligned: 47 Modelled: 51 Confidence: 28.1% Identity: 26% Fold: Split barrel-like Superfamily: FMN-binding split barrel Family: PNP-oxidase like Phyre2 PDB 2rog chain A Region: 26 - 77 Aligned: 50 Modelled: 52 Confidence: 27.0% Identity: 18% PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells Phyre2 PDB 1q8l chain A Region: 26 - 77 Aligned: 52 Modelled: 52 Confidence: 26.3% Identity: 12% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1mwz chain A Region: 26 - 77 Aligned: 51 Modelled: 52 Confidence: 26.2% Identity: 12% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1cpz chain A Region: 17 - 77 Aligned: 61 Modelled: 61 Confidence: 24.9% Identity: 15% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2k2p chain A Region: 18 - 77 Aligned: 58 Modelled: 60 Confidence: 24.6% Identity: 7% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 Phyre2 PDB 1qup chain A Region: 26 - 77 Aligned: 50 Modelled: 52 Confidence: 24.6% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase Phyre2 PDB 1qup chain A domain 2 Region: 26 - 77 Aligned: 50 Modelled: 52 Confidence: 24.5% Identity: 18% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2ga7 chain A Region: 26 - 77 Aligned: 52 Modelled: 52 Confidence: 24.2% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) Phyre2 PDB 2aj1 chain A Region: 26 - 68 Aligned: 43 Modelled: 43 Confidence: 24.1% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada Phyre2 PDB 1y3k chain A Region: 26 - 77 Aligned: 52 Modelled: 52 Confidence: 24.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein Phyre2 PDB 2crl chain A Region: 26 - 77 Aligned: 50 Modelled: 52 Confidence: 23.0% Identity: 22% PDB header:chaperone Chain: A: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase Phyre2 1 c3sf4F_ 2 c2gcfA_ 3 c3cxjB_ 4 d2ggpb1 5 c1yg0A_ 6 d1sb6a_ 7 c2kt2A_ 8 d2hfva1 9 d2a2ja1 10 c2rogA_ 11 d1q8la_ 12 d1mwza_ 13 d1cpza_ 14 c2k2pA_ 15 c1qupA_ 16 d1qupa2 17 c2ga7A_ 18 c2aj1A_ 19 c1y3kA_ 20 c2crlA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3sf4F_ 63.7 33 PDB header:signaling protein/protein binding Chain: F: PDB Molecule:protein inscuteable homolog; PDBTitle: crystal structure of the complex between the conserved cell polarity2 proteins inscuteable and lgn 2 c2gcfA_ 51.6 13 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 3 c3cxjB_ 43.4 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 4 d2ggpb1 35.2 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 5 c1yg0A_ 35.1 12 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 6 d1sb6a_ 33.4 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 7 c2kt2A_ 33.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 8 d2hfva1 29.6 15 Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like 9 d2a2ja1 28.1 26 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 10 c2rogA_ 27.0 18 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 11 d1q8la_ 26.3 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 12 d1mwza_ 26.2 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 13 d1cpza_ 24.9 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 14 c2k2pA_ 24.6 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 15 c1qupA_ 24.6 18 PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase 16 d1qupa2 24.5 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 17 c2ga7A_ 24.2 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 18 c2aj1A_ 24.1 21 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 19 c1y3kA_ 24.0 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 20 c2crlA_ 23.0 22 PDB header:chaperone Chain: A: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase 21 c2kkhA_ not modelled 22.5 12 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 22 c2hfvA_ not modelled 22.4 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 23 c1jk9D_ not modelled 21.3 18 PDB header:oxidoreductase Chain: D: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: heterodimer between h48f-ysod1 and yccs 24 c2gloA_ not modelled 21.2 15 PDB header:transcription/dna Chain: A: PDB Molecule:brinker cg9653-pa; PDBTitle: solution structure of the brinker dna binding domain in2 complex with the omb enhancer 25 d1p6ta2 not modelled 20.9 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 26 d1afia_ not modelled 20.0 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 27 c2ldiA_ not modelled 18.6 15 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 28 c2ofhX_ not modelled 18.3 14 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 29 d1sgga_ not modelled 18.0 32 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 30 d1p6ta1 not modelled 17.6 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 31 d1fe0a_ not modelled 16.1 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 32 d2aw0a_ not modelled 15.6 13 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 33 c3dxsX_ not modelled 15.4 21 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 34 c3senD_ not modelled 15.2 18 PDB header:signaling protein Chain: D: PDB Molecule:caskin-1; PDBTitle: structure of caskin1 tandem sams 35 c1yjrA_ not modelled 15.0 15 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 36 d1jx7a_ not modelled 14.2 13 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 37 d1jvna2 not modelled 14.1 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 38 d1osda_ not modelled 13.7 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 39 c2l0eA_ not modelled 13.6 28 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm vi of the nhe1 isoform of the2 na+/h+ exchanger 40 d2qifa1 not modelled 13.3 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 41 c2ew9A_ not modelled 13.2 17 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 42 d1x40a1 not modelled 13.0 17 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 43 c1b0xA_ not modelled 12.8 16 PDB header:transferase Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase); PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization. 44 d1b0xa_ not modelled 12.8 16 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 45 c2ropA_ not modelled 11.9 15 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b 46 c3k1rB_ not modelled 11.8 29 PDB header:structural protein Chain: B: PDB Molecule:usher syndrome type-1g protein; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 47 c2embA_ not modelled 11.8 63 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 342-2 372) of human zinc finger protein 473 48 d1kvja_ not modelled 11.6 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 49 c2p57A_ not modelled 11.5 40 PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein 50 c2qkqA_ not modelled 11.5 27 PDB header:transferase Chain: A: PDB Molecule:ephrin type-b receptor 4; PDBTitle: structure of the sam domain of human ephrin type-b receptor2 4 51 d1cc8a_ not modelled 11.4 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 52 d1bboa1 not modelled 11.4 33 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 53 d2czra1 not modelled 11.2 33 Fold:Restriction endonuclease-like Superfamily:TBP-interacting protein-like Family:TBP-interacting protein-like 54 c2a2jA_ not modelled 11.1 26 PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase; PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis 55 c3ed3A_ not modelled 11.1 10 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase mpd1; PDBTitle: crystal structure of the yeast dithiol/disulfide2 oxidoreductase mpd1p 56 d1fnda2 not modelled 10.6 14 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 57 d2d1pa1 not modelled 10.6 25 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 58 d1v38a_ not modelled 10.4 8 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 59 c3h8mB_ not modelled 10.4 25 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 7; PDBTitle: sam domain of human ephrin type-a receptor 7 (epha7) 60 d2v0ea1 not modelled 10.4 31 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 61 c3dwdB_ not modelled 10.2 30 PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1 62 c2kyzA_ not modelled 10.1 15 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 63 c2d9lA_ not modelled 10.1 30 PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip 64 c1vzhB_ not modelled 10.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:desulfoferrodoxin; PDBTitle: structure of superoxide reductase bound to ferrocyanide and2 active site expansion upon x-ray induced photoreduction 65 d1g7ea_ not modelled 10.0 6 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ERP29 N domain-like 66 d1ucva_ not modelled 9.8 36 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 67 c2iqjB_ not modelled 9.7 27 PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like 68 d1iowa2 not modelled 9.5 24 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 69 c2owaB_ not modelled 9.5 40 PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040) 70 d1dcqa2 not modelled 9.4 20 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:Pyk2-associated protein beta ARF-GAP domain 71 d1b4fa_ not modelled 8.9 21 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 72 c1wwuA_ not modelled 8.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein flj21935; PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935 73 d2ckca1 not modelled 8.7 31 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 74 c2ckcA_ not modelled 8.7 31 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 75 d1dpua_ not modelled 8.6 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 76 c1dpuA_ not modelled 8.6 11 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 77 c2e8nA_ not modelled 8.6 29 PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1) 78 c2l3mA_ not modelled 8.4 17 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 79 c2w9kA_ not modelled 8.3 13 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c 80 c2dl0A_ not modelled 8.3 14 PDB header:signaling protein Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1 81 c2dkzA_ not modelled 8.2 15 PDB header:signaling protein Chain: A: PDB Molecule:hypothetical protein loc64762; PDBTitle: solution structure of the sam_pnt-domain of the2 hypothetical protein loc64762 82 c3hilB_ not modelled 7.8 29 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1) 83 c3fryB_ not modelled 7.7 18 PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain 84 d2ca5a1 not modelled 7.7 37 Fold:Long alpha-hairpin Superfamily:MxiH-like Family:MxiH-like 85 c1j9zB_ not modelled 7.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 86 d1uv7a_ not modelled 7.6 15 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 87 c1uv7A_ not modelled 7.6 15 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 88 c3bq7A_ not modelled 7.6 24 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase delta; PDBTitle: sam domain of diacylglycerol kinase delta1 (e35g) 89 d1ow5a_ not modelled 7.5 14 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 90 c1ow5A_ not modelled 7.5 14 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase ste11; PDBTitle: nmr structure of the saccharomyces cerevisiae sam (sterile2 alpha motif) domain 91 c3kkaD_ not modelled 7.4 29 PDB header:transferase Chain: D: PDB Molecule:ephrin type-a receptor 2; PDBTitle: co-crystal structure of the sam domains of epha1 and epha2 92 c2ckaA_ not modelled 7.3 31 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 93 d2ckaa1 not modelled 7.3 31 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 94 c2eamA_ not modelled 7.3 28 PDB header:signaling protein Chain: A: PDB Molecule:putative 47 kda protein; PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein 95 c2qs7D_ not modelled 7.3 21 PDB header:oxidoreductase Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative oxidoreductase of the dsre/dsrf-like2 family (sso1126) from sulfolobus solfataricus p2 at 2.09 a resolution 96 d2f3na1 not modelled 7.3 12 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 97 c2fe9A_ not modelled 7.3 20 PDB header:rna binding protein Chain: A: PDB Molecule:protein vts1; PDBTitle: solution structure of the vts1 sam domain in the presence2 of rna 98 c2e8mA_ not modelled 7.2 17 PDB header:signaling protein Chain: A: PDB Molecule:epidermal growth factor receptor kinase PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8 99 c3fehA_ not modelled 7.1 27 PDB header:hydrolase activator Chain: A: PDB Molecule:centaurin-alpha-1; PDBTitle: crystal structure of full length centaurin alpha-1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0