Job Description P24186 Confidence 98.71% Date Thu Jan 5 11:41:04 GMT 2012 Rank 41 Aligned Residues 199 % Identity 18% Template c3tozA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad. Resolution 2.20 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.																		.
Query SS confidence																																																				.	.	.	.	.	.	.	.																		.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	K	D	V	D	G	.	F	H	P	Y
Query Conservation																																																				.	.	.	.	.	.	.	.																		.
Alig confidence																	.	.																.																		.	.	.	.	.	.	.	.																		.
Template Conservation																	.	.																.
Template Sequence		E	A	F	A	K	L	G	L	D	Y	V	Y	L	A	F	.	.	E	V	G	D	K	E	L	K	D	V	V	Q	G	F	R	.	A	M	N	L	R	G	W	N	V	S	M	P	N	K	T	N	I	H	K	Y	L	D	K	L	S	P	A	A	E	L	V	G	A	V	N	T	V	V	N	D	D	G	V	L	T	G	H
Template Known Secondary structure								T									.	.																.		T	T								T	T	S	T	T	T	G	G	G	G		S										T			S						T	T
Template Predicted Secondary structure																	.	.																.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																					.																																								.																			.	.
Query SS confidence																					.																																								.																			.	.
Query Sequence		N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	.	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	.	T	T	T	V	T	H	R	F	T	K	N	L	R	H	H	V	E	N	.	.
Query Conservation																					.																																								.																			.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																									.															.																			.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	G	T	G	Y	M	R	A	L	K	E	A	G	H	D	I	I	G	K	K	M	T	I	C	G	A	G	G	.	A	A	T	A	I	C	I	Q	A	A	L	D	G	V	K	E	I	S	I	F	N	R	K	D	D	F	Y	A	N	A	E	K	T	V	E
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T				T	T	S								S		.													T										S	S	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		111															.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
																													203	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	L	L	I	V	A	V	.	.	.	.	.	.	.	.	G	K	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		K	I	N	S	K	T	D	C	K	A	Q	L	F	D	I	E	D	H	E	Q	L	R	K	E	I	A	E	S	V	I	F	T	N	A	T	G	V	G	M	K	P	F	E	G	E	T	L	L	P	S	A	D	M	L	R	P	E	L	I	V	S	D	V	V	Y	K	P	T	K	T	R	.	.	.	.	.	.	.	L	L
Template Known Secondary structure							S	S								T	T											T		S						S	S	T	T	S	T	T	S	T	T			S				G	G	G			T	T						S			S	S	S	S			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	K	R	A	S	Y	I	T	P	V	P	G	G	V	G	P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence												.				.	.	.	.	.	.
Template Conservation												.				.	.	.	.	.	.
Template Sequence		E	I	A	E	E	Q	G	C	Q	T	.	L	N	G	.	.	.	.	.	.	L	G	M	M	L	W	Q	G	A	K	A	F	E	I	W	T	H	K	E
Template Known Secondary structure							T	T				.			T	.	.	.	.	.	.																	S	S
Template Predicted Secondary structure												.				.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.		.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions