Job Description P24186 Confidence 98.85% Date Thu Jan 5 11:41:04 GMT 2012 Rank 31 Aligned Residues 195 % Identity 20% Template c3o8qB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae Resolution 1.45 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.															.	.	.	120	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	D	N	V	K	V	L	E	R	I	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	D	V	D
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																				.													.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																				.													.	.	.	.	.
Template Sequence		L	F	A	R	Q	T	Q	Q	S	M	I	Y	.	.	T	A	Q	C	V	P	V	D	G	F	T	E	A	A	K	H	F	F	A	.	Q	G	G	R	G	C	N	V	T	V	P	F	.	.	.	.	.	K	E	E	A	Y	R	F	A	D	R	L	T	E	R	A	R	L	A	G	A	V	N	T	L	K	K	L	D	D
Template Known Secondary structure								T						.	.							T	T												.	T	T								T	T		.	.	.	.	.									S										T			S						T	T
Template Predicted Secondary structure														.	.																				.													.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		122		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.
Predicted Secondary structure			.																					.																																											.								.	.	.	.	.	.	.
Query SS confidence			.																					.																																											.								.	.	.	.	.	.	.
Query Sequence		G	.	F	H	P	Y	N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	.	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	.	T	T	T	V	T	H	R	.	.	.	.	.	.	.
Query Conservation			.																					.																																											.								.	.	.	.	.	.	.
Alig confidence			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.		.																												.															.								.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		G	E	I	L	G	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	G	E	G	L	V	Q	D	L	L	A	Q	Q	V	L	L	K	G	A	T	I	L	L	I	G	A	G	G	.	A	A	R	G	V	L	K	P	L	L	D	Q	Q	P	A	S	I	T	V	T	N	R	T	F	A	K	A	E	Q
Template Known Secondary structure		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T				T	T									S		.											T	T			S							S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		98	.	100	.	.	.	.															.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
													192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	F	T	K	N	L	R	H	H	V	E	N	A	D	L	L	I	V	A	V	G	K	P	G	F	.	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y	I	T	P	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																									.																								.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.
Template Sequence		L	A	E	L	V	A	A	Y	G	E	V	K	A	Q	A	F	E	Q	L	K	Q	S	Y	D	V	I	I	N	S	T	S	G	E	L	P	A	I	D	P	V	I	F	S	S	R	S	V	C	Y	D	M	M	Y	G	K	G	Y	T	V	.	.	.	.	.	.	.	F	N	Q	W	A	R	Q	H	G	C	A	Q	A	I
Template Known Secondary structure						T	G	G	G	S							G	G	G			S			S															G	G	G			T	T						S				S	S				.	.	.	.	.	.	.								T	T		S
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.	230	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	G	V	G	P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence				.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.
Template Sequence		D	G	.	.	.	.	.	.	L	G	M	L	V	G	Q	A	A	E	S	F	M	L	W	R	G	L	R
Template Known Secondary structure			T	.	.	.	.	.	.																	S	S
Template Predicted Secondary structure				.	.	.	.	.	.
Template SS confidence
		240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions