Job Description P24186 Confidence 98.68% Date Thu Jan 5 11:41:04 GMT 2012 Rank 42 Aligned Residues 199 % Identity 18% Template c3donA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from staphylococcus2 epidermidis Resolution 2.10 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.																		.
Query SS confidence																																																				.	.	.	.	.	.	.	.																		.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	K	D	V	D	G	.	F	H	P	Y
Query Conservation																																																				.	.	.	.	.	.	.	.																		.
Alig confidence																	.	.																.																		.	.	.	.	.	.	.	.																		.
Template Conservation																	.	.																.
Template Sequence		A	N	F	Q	S	L	N	L	E	N	T	Y	E	A	I	.	.	N	V	P	V	N	Q	F	Q	D	I	K	K	I	I	S	.	E	K	S	I	D	G	F	N	V	T	I	P	H	K	E	R	I	I	P	Y	L	D	D	I	N	E	Q	A	K	S	V	G	A	V	N	T	V	L	V	K	D	G	K	W	I	G	Y
Template Known Secondary structure							T	T									.	.				G	G	G	G	G	G							.		T	T		S						T	T		T	T	T	T	G	G	G		S										T									T	T
Template Predicted Secondary structure																	.	.																.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.
Predicted Secondary structure																																																												.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	.	T	T	T	V	T	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																												.															.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		N	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	G	Y	V	N	G	L	K	Q	I	Y	E	G	I	E	D	A	Y	I	L	I	L	G	A	G	G	.	A	S	K	G	I	A	N	E	L	Y	K	I	V	R	P	T	L	T	V	A	N	R	T	M	S	R	F	N	N	W	S	L	N	I	N	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.												S	T	T	G	G	G									S		.											T	T			S							S		G	G	G	G	T	T			S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		98	.	100														.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
			192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	F	T	K	N	L	R	H	H	V	E	N	A	D	L	L	I	V	A	V	G	K	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y	I	T	P	V	P	G	G	V	G	P	M	T	V	A	T
Query Conservation		.
Alig confidence		.																						.																										.	.	.	.	.	.	.													.				.	.	.	.	.	.
Template Conservation																								.																										.	.	.	.	.	.	.													.				.	.	.	.	.	.
Template Sequence		I	N	L	S	H	A	E	S	H	L	D	E	F	D	I	I	I	N	T	T	P	D	.	S	V	I	S	L	N	R	L	A	S	H	T	L	V	S	D	I	V	Y	N	P	Y	K	T	P	.	.	.	.	.	.	.	I	L	I	E	A	E	Q	R	G	N	P	I	.	Y	N	G	.	.	.	.	.	.	L	D	M
Template Known Secondary structure										T	G	G	G		S									.		S	S			T	T			S	S						S			S	S	S	S			.	.	.	.	.	.	.								T	T				.			T	.	.	.	.	.	.
Template Predicted Secondary structure																								.																										.	.	.	.	.	.	.													.				.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.	220	.	.		.	.	.							.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	H	Q	G	A	E	S	F	K	I	W	T	N	L	E
Template Known Secondary structure															S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions