Job Description P24186 Confidence 96.97% Date Thu Jan 5 11:41:04 GMT 2012 Rank 154 Aligned Residues 190 % Identity 21% Template c2o7qA_ PDB info PDB header:oxidoreductase,transferase Chain: A: PDB Molecule:bifunctional 3-dehydroquinate dehydratase/shikimate PDBTitle: crystal structure of the a. thaliana dhq-dehydroshikimate-sdh-2 shikimate-nadp(h) Resolution 2.20 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100								.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.		.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.																.	.								.
Query SS confidence																																															.	.	.	.	.	.	.																.	.								.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	.	.	.	.	.	.	.	L	P	A	G	I	D	N	V	K	V	L	E	R	I	H	.	.	P	D	K	D	V	D	G	.	F	H	P
Query Conservation																																															.	.	.	.	.	.	.																.	.								.
Alig confidence																				.	.	.	.											.													.	.	.	.	.	.	.																.	.								.
Template Conservation																				.	.	.	.											.
Template Sequence		Q	A	F	K	S	V	D	F	N	G	V	Y	V	H	L	L	V	D	.	.	.	.	N	L	V	S	F	L	Q	A	Y	S	.	S	S	D	F	A	G	F	S	C	T	I	P	H	K	E	A	A	L	Q	C	D	E	V	D	P	L	A	K	S	I	G	A	V	N	T	I	L	R	R	K	S	D	G	K	L	L	G
Template Known Secondary structure							T	T		S									S	.	.	.	.									T		.	S	T	T								T	T	S																		T			S						T	T	T
Template Predicted Secondary structure																				.	.	.	.											.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.					.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Y	N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	T	T	T	V	T	H	R	F	T	K	N	L	R	H	H	V	E	N	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.				.	.									.	.	.	.	.	.	.												.														.																			.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.				.	.									.	.	.	.	.	.	.												.														.
Template Sequence		Y	N	.	.	.	.	.	.	.	.	.	.	.	T	D	I	.	.	G	S	I	S	A	I	E	D	.	.	.	.	.	.	.	G	L	T	V	V	V	I	G	A	G	G	.	A	G	K	A	L	A	Y	G	A	K	E	K	A	.	K	V	V	I	A	N	R	T	Y	E	R	A	L	E	L	A	E	A	I	G	G
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.				.	.									.	.	.	.	.	.	.										S		.											T			.							S	S									T	T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.				.	.									.	.	.	.	.	.	.												.														.
Template SS confidence
		420	.												.	.	.			.	.	.	.	.	430	.	.								.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.	.	450	.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
															203	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	L	L	I	V	A	V	G	.	.	.	.	.	.	.	K	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y	I	T	P	V	P	G	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.																												.	.	.	.	.	.	.													.				.
Template Conservation																																																										.	.	.	.	.	.	.													.				.
Template Sequence		K	A	L	S	L	T	D	L	D	N	Y	E	D	G	M	V	L	A	N	T	T	S	M	G	M	Q	P	N	V	E	E	T	P	I	S	K	D	A	L	K	H	Y	A	L	V	F	D	A	V	Y	T	P	R	I	T	R	.	.	.	.	.	.	.	L	L	R	E	A	E	E	S	G	A	I	T	.	V	S	G	.
Template Known Secondary structure						G	G	G	T	T					S							S	S	T	T		T	T		T	T			S	S		G	G	G	G	G	G										S	S	S	S			.	.	.	.	.	.	.							T	T	T				.				.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.													.				.
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.								.	.	.	.	.	560	.	.	.	.	.	.		.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	S	E	M	F	V	R	Q	A	Y	E	Q	F	E	I	F	T	G	L	P
Template Known Secondary structure		.	.	.	.	.																		S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions