Job Description P24186 Confidence 98.82% Date Thu Jan 5 11:41:04 GMT 2012 Rank 33 Aligned Residues 202 % Identity 18% Template c2nloA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of the quinate dehydrogenase from corynebacterium2 glutamicum Resolution 1.64 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.
Predicted Secondary structure																			.	.	.																																		.	.	.	.	.	.	.	.													.						.
Query SS confidence																			.	.	.																																		.	.	.	.	.	.	.	.													.						.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	.	.	.	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	.	K	D	V	D	G	.
Query Conservation																			.	.	.																																		.	.	.	.	.	.	.	.													.						.
Alig confidence																			.	.	.																.																		.	.	.	.	.	.	.	.													.						.
Template Conservation																																					.
Template Sequence		A	E	G	L	A	Q	G	R	A	T	V	Y	R	R	I	D	T	L	G	S	R	A	S	G	Q	D	L	K	T	L	L	D	A	A	L	.	Y	L	G	F	N	G	L	N	I	T	H	P	Y	K	Q	A	V	L	P	L	L	D	E	V	S	E	Q	A	T	Q	L	G	A	V	N	T	V	V	I	D	A	T	G	H
Template Known Secondary structure							T	T										T	T	S	T	T	T	T	T												.		T	T								T	T		T	T	T	T	G	G	G	S	S										T									T	T	S
Template Predicted Secondary structure																																					.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.
Predicted Secondary structure																																																																.									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.									.	.	.	.	.	.	.	.	.
Query Sequence		F	H	P	Y	N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	.	T	T	T	V	T	H	R	F	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.									.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																											.															.									.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		T	T	G	H	N	T	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	F	G	R	G	M	E	E	G	L	P	N	A	K	L	D	S	V	V	Q	V	G	A	G	G	.	V	G	N	A	V	A	Y	A	L	V	T	H	G	V	Q	K	L	Q	V	A	D	L	D	T	S	R	A	Q	A	L	A	D
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.												T	T				S								S	T	.	T											T	T		S							S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		123	.	.	.	.	.	.	130														.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
																	193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	K	N	L	R	H	H	V	E	N	A	D	L	L	I	V	A	V	G	.	.	.	.	.	.	K	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.
Template Sequence		V	I	N	N	A	V	G	R	E	A	V	V	G	V	D	A	R	G	I	E	D	V	I	A	A	A	D	G	V	V	N	A	T	P	M	G	M	P	A	H	P	G	T	A	F	D	V	S	C	L	T	K	D	H	W	V	G	D	V	V	Y	M	P	I	E	T	.	.	.	.	.	.	.	E	L	L	K	A	A	R
Template Known Secondary structure								T	S								S	T	T								S	S						S	S	T	T	S	T	T	S		S		S	S		G	G	G			T	T						S			S	S	S	S		.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.								.	.	.	.	.	260	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	S	Y	I	T	P	V	P	G	G	V	G	P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence								.				.	.	.	.	.	.
Template Conservation								.				.	.	.	.	.	.
Template Sequence		A	L	G	C	E	T	.	L	D	G	.	.	.	.	.	.	T	R	M	A	I	H	Q	A	V	D	A	F	R	L	F	T	G	L	E
Template Known Secondary structure				T				.			T	.	.	.	.	.	.																	S
Template Predicted Secondary structure								.				.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.		.	.	270							.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions