Job Description P24186 Confidence 98.81% Date Thu Jan 5 11:41:04 GMT 2012 Rank 34 Aligned Residues 197 % Identity 21% Template c2hk8B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution Resolution 2.35 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.																			.
Query SS confidence																																																				.	.	.	.	.	.	.	.																			.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	K	D	V	D	G	F	.	H	P	Y
Query Conservation																																																				.	.	.	.	.	.	.	.																			.
Alig confidence																		.	.																.																	.	.	.	.	.	.	.	.																			.
Template Conservation																		.	.																.
Template Sequence		A	L	I	R	Y	A	G	L	N	A	V	Y	L	A	F	E	.	.	I	N	P	E	E	L	K	K	A	F	E	G	F	K	A	.	L	K	V	K	G	I	N	V	T	V	P	F	K	E	E	I	I	P	L	L	D	Y	V	E	D	T	A	K	E	I	G	A	V	N	T	V	K	F	E	N	G	K	A	Y	G	Y
Template Known Secondary structure								T		S								.	.			G	G	G											.	T	T								T	T		T	T	T	T	G	G	G		S										T									T	T
Template Predicted Secondary structure																		.	.																.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																			.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	.	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	T	T	T	V	T	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.			.																											.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	W	I	G	F	L	K	S	L	K	S	L	I	P	E	V	K	E	K	S	I	L	V	L	G	A	G	G	.	A	S	R	A	V	I	Y	A	L	V	K	E	G	A	K	V	F	L	W	N	R	T	K	E	K	A	I	K	L	A	Q	K	F	P	L
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T		S			T	T									S		.												T	T								S	S											S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		104															.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
			192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.							.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.																						.	.	.	.	.	.
Query SS confidence		.																						.	.	.	.	.	.
Query Sequence		.	F	T	K	N	L	R	H	H	V	E	N	A	D	L	L	I	V	A	V	G	K	.	.	.	.	.	.	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y	I	T	P	V	P	G	G	V	G
Query Conservation		.																						.	.	.	.	.	.
Alig confidence		.																						.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.													.				.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.													.				.	.	.
Template Sequence		E	V	V	N	S	P	E	E	V	I	D	K	V	Q	V	I	V	N	T	T	S	V	G	L	K	D	E	D	P	E	I	F	N	Y	D	L	I	K	K	D	H	V	V	V	D	I	I	Y	K	E	T	K	.	.	.	.	.	.	.	.	.	L	L	K	K	A	K	E	K	G	A	K	L	.	L	D	G	.	.	.
Template Known Secondary structure					S		G	G	G	T	G	G	G		S						S	S	T	T	S	S	T	T				S	S		G	G	G			T	T							S	S	S				.	.	.	.	.	.	.	.	.								T	T				.			S	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.													.				.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220										.	.	.	.	.	.	.	.	.	230	.	.		.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	P	M	L	L	W	Q	G	I	E	A	F	K	I	W	N	G	C	E
Template Known Secondary structure		.	.	.																	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions