Job Description P24186 Confidence 98.52% Date Thu Jan 5 11:41:04 GMT 2012 Rank 61 Aligned Residues 197 % Identity 23% Template c2ev9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from thermus2 thermophilus hb8 in complex with nadp(h) and shikimate Resolution 1.90 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.					.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.																		.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.																		.	.	.	.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	K	D	V	D	G	.	.	.	.	F
Query Conservation																																																				.	.	.	.	.	.	.	.																		.	.	.	.
Alig confidence																	.	.																.	.																	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation																	.	.																.	.
Template Sequence		F	A	L	E	S	L	G	L	E	G	S	Y	E	A	W	.	.	D	T	P	L	E	A	L	P	G	R	L	K	E	V	R	.	.	R	A	F	R	G	V	N	L	T	L	P	L	K	E	A	A	L	A	H	L	D	W	V	S	P	E	A	Q	R	I	G	A	V	N	T	V	L	Q	V	E	G	R	L	F	G	F
Template Known Secondary structure							T	T									.	.				G	G	G										.	.				S						T	T	S	S	S	T	T	G	G	G	S	S										T									T	T
Template Predicted Secondary structure																	.	.																.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		H	P	Y	N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	T	T	T	V	T	H	R	F	T	K	N	L	R	H	H	V	E	N	.
Query Conservation																																																																																	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.									.																																	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.									.
Template Sequence		N	T	D	A	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	E	A	L	K	A	G	G	I	P	L	K	G	P	.	A	L	V	L	G	A	G	G	.	A	G	R	A	V	A	F	A	L	R	E	A	G	L	E	V	W	V	W	N	R	T	P	Q	R	A	L	A	L	A	E	E	F
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T					S		.							S		.												T	T								S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.									.
Template SS confidence
		98	.	100	.	.	.																	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
														203	.	.	.	.	.	.	210	.	.							.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	D	L	L	I	V	A	V	G	K	.	.	.	.	.	.	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y	I	T	P	V	P	G	G	V	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.																											.	.	.	.	.	.	.													.				.	.	.
Template Conservation																																																								.	.	.	.	.	.	.													.				.	.	.
Template Sequence		G	L	R	A	V	P	L	E	K	A	R	E	A	R	L	L	V	N	A	T	R	V	G	L	E	D	P	S	A	S	P	L	P	A	E	L	F	P	E	E	G	A	A	V	D	L	V	Y	R	P	L	W	T	R	.	.	.	.	.	.	.	F	L	R	E	A	K	A	K	G	L	K	V	.	Q	T	G	.	.	.
Template Known Secondary structure		T						G	G	G	G	G	G		S						S	S	T	T	T	T		T	T			S	S		G	G	G			S	S						S			S	S	S	S			.	.	.	.	.	.	.								T	T				.			S	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.													.				.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.								.	.	.	.	.	.	220	.	.	.	.	.		.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q	D	E
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	P	M	L	A	W	Q	G	A	L	A	F	R	L	W	T	G	L	L	P	D
Template Known Secondary structure		.	.	.																	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions