Job Description P24186 Confidence 98.72% Date Thu Jan 5 11:41:04 GMT 2012 Rank 39 Aligned Residues 202 % Identity 25% Template c2eggA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from2 geobacillus kaustophilus Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.																		.
Query SS confidence																																																				.	.	.	.	.	.	.	.																		.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	K	D	V	D	G	.	F	H	P	Y
Query Conservation																																																				.	.	.	.	.	.	.	.																		.
Alig confidence																	.	.																			.															.	.	.	.	.	.	.	.																		.
Template Conservation																	.	.																			.
Template Sequence		D	A	F	A	R	L	G	I	P	A	R	Y	H	L	F	.	.	S	V	E	P	G	Q	V	G	A	A	I	A	G	V	R	A	L	G	.	I	A	G	V	N	V	T	I	P	H	K	L	A	V	I	P	F	L	D	E	V	D	E	H	A	R	R	I	G	A	V	N	T	I	I	N	N	D	G	R	L	V	G	Y
Template Known Secondary structure							T	T									.	.				T	T													T	.								T	T		T	T	T	T	G	G	G		S										T									T	T
Template Predicted Secondary structure																	.	.																			.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.
Predicted Secondary structure																													.																																.								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.																																.								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	I	V	T	L	L	E	R	Y	.	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	.	T	T	T	V	T	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.																																.								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.												.																	.															.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		N	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	G	Y	V	Q	A	L	E	E	E	M	N	I	T	L	D	G	K	R	I	L	V	I	G	A	G	G	.	G	A	R	G	I	Y	F	S	L	L	S	T	A	A	E	R	I	D	M	A	N	R	T	V	E	K	A	E	R	L	V	R	E	G	D
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.												T	T				T	T									S		.											T	T	T		S							S	S											S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		121	.	.														.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
									192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	F	T	K	N	L	R	H	H	V	E	N	A	D	L	L	I	V	A	V	G	.	.	.	.	.	.	.	K	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y	I	T
Query Conservation		.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																					.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.
Template Sequence		E	R	R	S	A	Y	F	S	L	A	E	A	E	T	R	L	A	E	Y	D	I	I	I	N	T	T	S	V	G	M	H	P	R	V	E	V	Q	P	L	S	L	E	R	L	R	P	G	V	I	V	S	D	I	I	Y	N	P	L	E	T	.	.	.	.	.	.	.	K	W	L	K	E	A	K	A	R	G	A	R	V
Template Known Secondary structure		S	S	S												T	G	G	G		S						S		T	T		S	S			S			S	S			T	T			T	T									S	S	S	S		.	.	.	.	.	.	.									T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	P	G	G	V	G	P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q	D	E
Query Conservation
Alig confidence		.				.	.	.	.	.	.
Template Conservation		.				.	.	.	.	.	.
Template Sequence		.	Q	N	G	.	.	.	.	.	.	V	G	M	L	V	Y	Q	G	A	L	A	F	E	K	W	T	G	Q	W	P	D
Template Known Secondary structure		.			S	.	.	.	.	.	.																	S
Template Predicted Secondary structure		.				.	.	.	.	.	.
Template SS confidence
			260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions