Job Description P24186 Confidence 98.31% Date Thu Jan 5 11:41:04 GMT 2012 Rank 89 Aligned Residues 207 % Identity 19% Template c1vi2B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad Resolution 2.10 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	D	N	V	K	V	L	E	R	I	H	P	D	K	D	V	D	G	F	H	P	Y	N	V	G	R	L	C	Q	R	A
Query Conservation
Alig confidence																	.	.																			.											.	.	.	.	.										.
Template Conservation																	.	.																			.											.	.	.	.	.										.
Template Sequence		K	A	L	E	K	A	G	L	P	F	T	Y	X	A	F	.	.	E	V	D	N	D	S	F	P	G	A	I	E	G	L	K	A	L	K	.	X	R	G	T	G	V	S	X	P	N	.	.	.	.	.	K	Q	L	A	C	E	Y	V	D	.	E	L	T	P	A	A	K	L	V	G	A	I	N	T	I	V	N	D	D
Template Known Secondary structure							T	T		S							.	.				T	T	T												T	.		S						T	T	S	.	.	.	.	.					G	G	G		S	.										T			S						T
Template Predicted Secondary structure																	.	.																			.											.	.	.	.	.										.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		136	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.
Predicted Secondary structure								.	.																																												.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																																												.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	L	R	P	C	.	.	T	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	.	T	T	T	V	T	H	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.																																												.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																													.															.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		G	Y	L	R	G	Y	N	T	D	G	T	G	H	I	R	A	I	K	E	S	G	F	D	I	K	G	K	T	X	V	L	L	G	A	G	G	.	A	S	T	A	I	G	A	Q	G	A	I	E	G	L	K	E	I	K	L	F	N	R	R	D	E	F	F	D	K	A	L	A	F	A	Q	R	V	N	E	N	T	D	C
Template Known Secondary structure		T																				T				T	T									S		.												T	T										S	S																	S	S
Template Predicted Secondary structure																																						.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
											193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	T	K	N	L	R	H	H	V	E	N	A	D	L	L	I	V	A	V	.	.	.	.	.	.	.	.	G	K	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y
Query Conservation		.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.
Template Sequence		V	V	T	V	T	D	L	A	D	Q	Q	A	F	A	E	A	L	A	S	A	D	I	L	T	N	G	T	K	V	G	X	K	P	L	E	N	E	S	L	V	N	D	I	S	L	L	H	P	G	L	L	V	T	E	C	V	Y	N	P	H	X	T	K	.	.	.	.	.	.	.	L	L	Q	Q	A	Q	Q	A	G	C
Template Known Secondary structure								T	T											S		S						S	S	T	T	S	T	T		T	T			S		S		G	G	G			T	T									S	S	S	S			.	.	.	.	.	.	.									T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240								.	.	.	.	.	.	.	.	.	250
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	P	V	P	G	G	V	G	P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence				.				.	.	.	.	.	.
Template Conservation				.				.	.	.	.	.	.
Template Sequence		K	T	.	I	D	G	.	.	.	.	.	.	Y	G	X	L	L	W	Q	G	A	E	Q	F	T	L	W	T	G	K	D
Template Known Secondary structure				.				.	.	.	.	.	.																	S	S
Template Predicted Secondary structure				.				.	.	.	.	.	.
Template SS confidence
		251	.		.	.	.							.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions