Job Description P24186 Confidence 98.66% Date Thu Jan 5 11:41:04 GMT 2012 Rank 44 Aligned Residues 200 % Identity 18% Template c1p74B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from2 haemophilus influenzae Resolution 2.40 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.		.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.													.						.
Query SS confidence																																																				.	.	.	.	.	.	.	.													.						.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	.	K	D	V	D	G	.	F	H	P
Query Conservation																																																				.	.	.	.	.	.	.	.													.						.
Alig confidence																	.	.																.																		.	.	.	.	.	.	.	.													.						.
Template Conservation																	.	.																.
Template Sequence		K	L	A	A	Q	T	H	Q	T	M	E	Y	I	A	K	.	.	L	G	D	L	D	A	F	E	Q	Q	L	L	A	F	F	.	E	E	G	A	K	G	C	N	I	T	S	P	F	K	E	R	A	Y	Q	L	A	D	E	Y	S	Q	R	A	K	L	A	E	A	C	N	T	L	K	K	L	D	D	G	K	L	Y	A
Template Known Secondary structure							T	T									.	.				T	T	T										.		T	T								T	T							T	T		S										T			S						S	S	S
Template Predicted Secondary structure																	.	.																.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Y	N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	T	T	T	V	T	H	R	F	T	K	N	L	R	H	H	V	E	N	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																												.																																	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		D	N	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	G	L	V	T	D	L	Q	R	L	N	W	L	R	P	N	Q	H	V	L	I	L	G	A	G	G	.	A	T	K	G	V	L	L	P	L	L	Q	A	Q	Q	N	I	V	L	A	N	R	T	F	S	K	T	K	E	L	A	E	R	F	Q	P
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.											T	T				T	T								S	S	T	.	T	T	T	T	T							T	T								S	S												G	G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		99	100	.	.														.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
																		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	L	L	I	V	A	V	G	K	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	.	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y	I	T	P	V	P	G	G	V	G	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																						.				.	.	.	.	.	.	.																		.	.	.	.
Template Conservation																												.																										.	.	.	.	.	.	.																		.	.	.	.
Template Sequence		Y	G	N	I	Q	A	V	S	M	D	S	I	P	L	Q	T	Y	D	L	V	I	N	A	T	S	A	.	A	S	V	D	A	E	I	L	K	L	G	S	A	F	Y	D	M	Q	Y	A	K	G	T	D	T	.	.	.	.	.	.	.	P	F	I	A	L	C	K	S	L	G	L	T	N	V	S	D	G	.	.	.	.
Template Known Secondary structure		G	S							G	G	G				S		B	S									.									T	T	B	S					S				S	S	S			.	.	.	.	.	.	.									T	T							S	.	.	.	.
Template Predicted Secondary structure																												.																										.	.	.	.	.	.	.																		.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	F	G	M	L	V	A	Q	A	A	H	S	F	H	L	W	R	G	V	M
Template Known Secondary structure		.	.																	S
Template Predicted Secondary structure		.	.
Template SS confidence
				239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions