Job Description P24186 Confidence 98.49% Date Thu Jan 5 11:41:04 GMT 2012 Rank 67 Aligned Residues 199 % Identity 25% Template c1nvtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5'-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+ Resolution 2.35 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.																		.
Query SS confidence																																																				.	.	.	.	.	.	.	.																		.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	K	D	V	D	G	.	F	H	P	Y
Query Conservation																																																				.	.	.	.	.	.	.	.																		.
Alig confidence																	.	.																.																		.	.	.	.	.	.	.	.																		.
Template Conservation																	.	.																.
Template Sequence		A	A	F	K	D	K	G	L	N	Y	V	Y	V	A	F	.	.	D	V	L	P	E	N	L	K	Y	V	I	D	G	A	K	.	A	L	G	I	V	G	F	N	V	T	I	P	H	K	I	E	I	M	K	Y	L	D	E	I	D	K	D	A	Q	L	I	G	A	V	N	T	I	K	I	E	D	G	K	A	I	G	Y
Template Known Secondary structure							T	T									.	.				G	G	G	G	G	G							.			T								T	T	S	T	T	G	G	G	G	G		S										T									T	T
Template Predicted Secondary structure																	.	.																.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	T	T	T	V	T	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																												.														.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																												.														.
Template Sequence		N	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	G	A	R	M	A	L	E	E	E	I	G	R	V	K	D	K	N	I	V	I	Y	G	A	G	G	.	A	A	R	A	V	A	F	E	L	A	K	D	N	.	N	I	I	I	A	N	R	T	V	E	K	A	E	A	L	A	K	E	I	A	E	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																	S									S		.										T	S	S	S	.							S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																												.														.
Template SS confidence
		109	110	.														.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
											192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	F	T	K	N	L	R	H	H	V	E	N	A	D	L	L	I	V	A	V	.	.	.	.	.	.	.	.	G	K	P	G	F	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S
Query Conservation		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.
Template Sequence		L	N	K	K	F	G	E	E	V	K	F	S	G	L	D	V	D	L	D	G	V	D	I	I	I	N	A	T	P	I	G	M	Y	P	N	I	D	V	E	P	I	V	K	A	E	K	L	R	E	D	M	V	V	M	D	L	I	Y	N	P	L	E	T	V	.	.	.	.	.	.	.	L	L	K	E	A	K	K	V	N
Template Known Secondary structure			T												T	T				T	T								S		T	T		T	T			S	S			S	S		S	T	T			S	S	S								S	S	S	S			.	.	.	.	.	.	.							T	T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.								.	.	240	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	T	P	V	P	G	G	V	G	P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence					.				.	.	.	.	.	.
Template Conservation					.				.	.	.	.	.	.
Template Sequence		A	K	T	.	I	N	G	.	.	.	.	.	.	L	G	M	L	I	Y	Q	G	A	V	A	F	K	I	W	T	G	V	E
Template Known Secondary structure					.			T	.	.	.	.	.	.																	S	S
Template Predicted Secondary structure					.				.	.	.	.	.	.
Template SS confidence
		247	.	.		250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions