Job Description P24186 Confidence 98.29% Date Thu Jan 5 11:41:04 GMT 2012 Rank 90 Aligned Residues 197 % Identity 20% Template c1npyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical shikimate 5-dehydrogenase-like PDBTitle: structure of shikimate 5-dehydrogenase-like protein hi0607 Resolution 1.75 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.																		.
Query SS confidence																																																				.	.	.	.	.	.	.	.																		.
Query Sequence		K	A	C	E	E	V	G	F	V	S	R	S	Y	D	L	P	E	T	T	S	E	A	E	L	L	E	L	I	D	T	L	N	A	D	N	T	I	D	G	I	L	V	Q	L	P	L	P	A	G	I	.	.	.	.	.	.	.	.	D	N	V	K	V	L	E	R	I	H	P	D	K	D	V	D	G	.	F	H	P	Y
Query Conservation																																																				.	.	.	.	.	.	.	.																		.
Alig confidence																				.														.	.	.	.															.	.	.	.	.	.	.	.																		.
Template Conservation																				.														.	.	.	.
Template Sequence		Y	L	Y	D	K	L	G	L	N	F	I	Y	K	A	F	T	T	Q	.	D	I	E	H	A	I	K	G	V	R	A	L	G	.	.	.	.	I	R	G	C	A	V	S	M	P	F	K	E	T	C	M	P	F	L	D	E	I	H	P	S	A	Q	A	I	E	S	V	N	T	I	V	N	D	N	G	F	L	R	A	Y
Template Known Secondary structure								T											S	.													T	.	.	.	.								T	T		T	T	T	T	G	G	G		S								T	T	T									T	T
Template Predicted Secondary structure																				.														.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																												.																			.	.	.
Query SS confidence																																																												.																			.	.	.
Query Sequence		N	V	G	R	L	C	Q	R	A	P	R	L	R	P	C	T	P	R	G	I	V	T	L	L	E	R	Y	N	I	D	T	F	G	L	N	A	V	V	I	G	A	S	N	I	V	G	R	P	M	S	M	E	L	L	L	A	G	C	.	T	T	T	V	T	H	R	F	T	K	N	L	R	H	H	V	E	N	.	.	.
Query Conservation																																																												.																			.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.															.													.															.																			.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.															.													.
Template Sequence		N	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	A	I	V	K	L	I	E	K	Y	H	L	N	.	K	N	A	K	V	I	V	H	G	S	G	G	.	M	A	K	A	V	V	A	A	F	K	N	S	G	F	E	K	L	K	I	Y	A	R	N	V	K	T	G	Q	Y	L	A	A	L	Y	G	Y
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.											T	T			.	T	T	S							S	S	T	.	T											T	T									S													T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.															.													.
Template SS confidence
		101	.	.														.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
												203	.	.	.	.	.	.	210	.	.	.	.	.										.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	D	L	L	I	V	A	V	G	K	P	G	F	.	.	.	.	.	.	.	.	.	I	P	G	D	W	I	K	E	G	A	I	V	I	D	V	G	I	N	R	L	E	N	G	K	V	V	G	D	V	V	F	E	D	A	A	K	R	A	S	Y	I	T	P	V	P	G	G	V
Query Conservation		.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.													.				.	.
Template Conservation																																																									.	.	.	.	.	.	.													.				.	.
Template Sequence		A	Y	I	N	S	L	E	N	Q	Q	A	D	I	L	V	N	V	T	S	I	G	M	K	G	G	K	E	E	M	D	L	A	F	P	K	A	F	I	D	N	A	S	V	A	F	D	V	V	A	M	P	V	E	T	P	.	.	.	.	.	.	.	F	I	R	Y	A	Q	A	R	G	K	Q	T	.	I	S	G	.	.
Template Known Secondary structure					S			T	T				S						S	S	T	T		T	T	S	T	T	T	T	S		S	S									S								S	S	S	S			.	.	.	.	.	.	.								T	T				.				.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.													.				.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220								.	.	.	.	.	.	.	.	.	230	.	.		.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	M	T	V	A	T	L	I	E	N	T	L	Q	A	C	V	E	Y	H	D	P	Q
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	A	A	V	I	V	L	Q	A	V	E	Q	F	E	L	Y	T	H	Q	R
Template Known Secondary structure		.	.	.	.																	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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