Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9L8
Confidence98.53%DateThu Jan 5 11:10:40 GMT 2012
Rank163Aligned Residues95
% Identity14%Templatec8ldhA_
PDB info PDB header:oxidoreductase(choh(d)-nad(a))Chain: A: PDB Molecule:m4 apo-lactate dehydrogenase; PDBTitle: refined crystal structure of dogfish m4 apo-lactate2 dehydrogenase
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40......... 50.........60.........70..
Predicted Secondary structure 














.........






Query SS confidence 















































. . . . . . . . .






















Query Sequence  EKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQF. . . . . . . . . GINAAESAQEVAQIADIIFAAVK
Query Conservation    





 
 

  

  
   
      
 
  
       
    .........               




 
 
Alig confidence 

























..



















.........






















Template Conservation    







 

  

  
      .. 

 
 
     
     

                    
 






 

Template Sequence  YNKITVVGVGAVGMACAISILMKDLA. . DEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAG
Template Known Secondary structure  SS

STTT

..S
S
TGGG




SSGGGGTT
S


Template Predicted Secondary structure 









..
















Template SS confidence 















































































   20.........30.........40..... ....50.........60.........70.........80.........90.......
 
   73 ......80.........90.........
Predicted Secondary structure  ................








Query SS confidence 
. . . . . . . . . . . . . . . .

























Query Sequence  P. . . . . . . . . . . . . . . . GIMIKVLSEITSSLNKDSLVVSIAAG
Query Conservation   ................     
   
         
 
    
Alig confidence 
................











.












Template Conservation       
  
      
  
   
   
  .  
 








Template Sequence  ARQQEGESRLNLVQRNVNIFKFIIPNIVK. HSPDCIILVVSNP
Template Known Secondary structure 



TT

.
TT

SSS
Template Predicted Secondary structure 






.





Template SS confidence 










































   98.100.........110.........120...... ...130.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions