Job Description P0A9L8 Confidence 99.96% Date Thu Jan 5 11:10:40 GMT 2012 Rank 14 Aligned Residues 256 % Identity 16% Template c2g5cD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		E	K	K	I	G	F	I	G	C	G	N	M	G	K	A	I	L	G	G	L	I	A	S	G	Q	V	L	P	G	Q	I	W	V	Y	T	P	S	P	D	K	V	A	A	L	H	D	Q	F	G	.	.	I	N	A	A	E	S	A	Q	E	V	A	Q	I	A	D	I	I	F	A	A	V	K	P	G	I	M	I	K	V
Query Conservation																																																			.	.
Alig confidence																												.	.																						.	.
Template Conservation																												.	.
Template Sequence		X	Q	N	V	L	I	V	G	V	G	F	X	G	G	S	F	A	K	S	L	R	R	S	G	F	K	.	.	G	K	I	Y	G	Y	D	I	N	P	E	S	I	S	K	A	V	D	L	G	I	I	D	E	G	T	T	S	I	A	K	V	E	D	F	S	P	D	F	V	X	L	S	S	P	V	R	T	F	R	E	I
Template Known Secondary structure									S		S													T	T			.	.	S							S											T	T	S		S				S		G	G	G	G	G	G	G			S						S		G	G	G
Template Predicted Secondary structure																												.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.												.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	E	I	T	S	S	L	N	K	D	S	L	V	V	S	I	A	A	G	V	T	L	D	Q	L	A	R	A	L	G	H	D	R	K	I	I	R	A	M	P	N	T	P	A	L	.	.	.	.	.	.	.	.	.	.	.	V	N	A	G	M	T	S	V	T	P	N	A	L	V	T	P	E	D	T	A	D	V	L
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	K	L	S	Y	I	L	S	E	D	A	T	V	T	D	Q	G	S	V	K	G	K	L	V	Y	D	L	E	N	I	L	G	K	R	F	V	G	G	H	P	I	A	G	T	E	K	S	G	V	E	Y	S	L	D	N	L	Y	E	G	K	K	V	I	L	T	P	T	K	K	T	D	K	K	R	L	K	L	V	K
Template Known Secondary structure									S		T	T								S			T											G	G	G											S			S	G	G	G			S	S	T	T	T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		149	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		N	I	F	R	C	F	G	.	E	A	E	V	I	A	E	P	M	I	H	P	V	V	G	V	S	G	S	S	P	A	Y	V	F	M	F	I	E	A	M	A	D	A	A	V	L	G	G	M	P	R	A	Q	A	Y	K	F	A	A	Q	A	V	M	G	S	A	K	M	V	L	E	T	G	E	H	P	G	A	L	K	D
Query Conservation									.
Alig confidence									.																											.	.	.																																			.	.	.
Template Conservation																																				.	.	.																																			.	.	.
Template Sequence		R	V	W	E	D	V	G	G	V	V	E	Y	X	S	P	E	L	H	D	Y	V	F	G	V	V	S	H	L	P	H	A	V	A	F	.	.	.	A	L	V	D	T	L	I	H	X	S	T	P	E	V	D	L	F	K	Y	P	G	G	G	F	K	D	F	T	R	I	A	K	S	D	.	.	.	P	I	X	W	R	D
Template Known Secondary structure							T	T																			T									.	.	.									T			S	S			G	G	G										T	G	G	G	G	S		.	.	.
Template Predicted Secondary structure																																				.	.	.																																			.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.					.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																				.	.									.	.	.	.
Query SS confidence																				.	.									.	.	.	.
Query Sequence		M	V	C	S	P	G	G	T	T	I	E	A	V	R	V	L	E	E	.	.	K	G	F	R	A	A	V	I	.	.	.	.	E	A	M	T	K	C	M	E	K	S	E	K
Query Conservation																				.	.									.	.	.	.
Alig confidence																				.	.									.	.	.	.
Template Conservation
Template Sequence		I	F	L	E	N	K	E	N	V	X	K	A	I	E	G	F	E	K	S	L	N	H	L	K	E	L	I	V	R	E	A	E	E	E	L	V	E	Y	L	K	E	V	K	I
Template Known Secondary structure						T																								T	T										G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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