Job Description Q46841 Confidence 99.96% Date Wed Jan 25 15:21:13 GMT 2012 Rank 1 Aligned Residues 347 % Identity 11% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	I	K	H	W	F	A	D	G	A	F	R	T	I	I	R	N	S	A	W	L	G	S	S	N	V	V	S	A	L	L	G	L	L	A	L	S	C	A	G	K	G	M	T	P	A	M	F	G	V	L	V	I	V	Q	S	Y	A	K	S	I	S	D	F	I	K	F	Q	T	W	Q	L	V	V	Q	Y	G	T	P
Query Conservation
Alig confidence										.	.																																	.																								.
Template Conservation										.	.																																	.																								.
Template Sequence		N	S	V	H	R	Y	K	K	.	.	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	.	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	.	V	G	L	L	M	A	L	V	P	V	V	A	Q
Template Known Secondary structure		T	T							.	.																																	.		T	T	T	T	T	T																	.								G	G	G		T	T
Template Predicted Secondary structure										.	.																																	.																								.
Template SS confidence
		3	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.
Query SS confidence																																																					.	.	.	.
Query Sequence		A	L	T	N	N	N	P	Q	Q	F	R	N	V	V	S	F	S	F	S	L	D	I	V	S	G	A	V	A	I	V	G	G	I	A	L	L	P	F	L	S	H	S	L	G	L	D	D	Q	S	F	W	.	.	.	.	L	A	A	L	Y	C	T	L	I	P	S	M	A	S	S	T	P	T	G	I	L	R	A	V	D
Query Conservation																																																					.	.	.	.
Alig confidence																																																					.	.	.	.
Template Conservation
Template Sequence		L	N	G	A	G	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S
Template Known Secondary structure		S		S	S	S	S	S	S	S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		R	F	D	L	I	A	V	Q	Q	A	T	K	P	F	L	R	A	A	G	S	V	V	A	W	Y	F	D	F	G	F	.	.	.	.	A	G	F	V	I	A	W	Y	V	S	N	L	V	G	G	T	M	Y	W	W	F	A	A	R	E	L	R	R	R	N	I	H	N	A	F	K	L	N	L	F	E	S	A	R	Y	I
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence		L	T	K	P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L
Template Known Secondary structure																										T	T		S	S																														T		T	T												S	S	T	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		K	G	A	W	S	F	V	W	S	T	N	I	A	H	S	I	W	S	A	R	N	S	C	S	T	V	L	V	G	I	V	L	G	P	A	A	A	G	L	F	K	I	A	M	T	F	F	D	A	A	G	T	P	A	G	L	L	G	K	S	F	Y	P	E	V	M	R	L	D	P	R	T	T	.	.	R	P	W	L	L
Query Conservation																																																																											.	.
Alig confidence																																.																																											.	.
Template Conservation																																.
Template Sequence		I	R	L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	.	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A
Template Known Secondary structure		T	T	T																									T			.	S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure																																.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		G	V	K	S	G	L	L	A	G	G	I	G	I	L	V	A	L	A	V	L	I	V	G	K	P	L	I	S	L	V	F	.	.	G	V	K	Y	L	E	A	Y	D	L	I
Query Conservation																																	.	.
Alig confidence																																	.	.
Template Conservation
Template Sequence		A	N	V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L
Template Known Secondary structure																														T	S	S		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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