Job Description Q46841 Confidence 4.73% Date Wed Jan 25 15:21:13 GMT 2012 Rank 13 Aligned Residues 257 % Identity 9% Template c3dinF_ PDB info PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase Resolution 4.50 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	T	N	N	N	P	Q	Q	F	R	N	V	V	S	F	S	F	S	L	D	I	V	S	G	A	V	A	I	V	G	G	I	A	L	L	P	F	L	S	H	S	L	G	L	D	D	Q	S	F	W	L	A	A	L	Y	C	T	L	I	P	S	M	A	S	S	T	P	T	G	I	L	R	A	V	D	R	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	M	L	R	E	G	E	E	G	R	K	K	F	A	K	Y	T	R	R	L	T	L	L	I	G	G	F	Q	A	F	F	V	S	F	S	L	A	R	S	N	P	D	M	V	A	P	G	V	N	V	L	Q	F	T	V	L	S	T	M	S	M	L	A	G	T	M	F	L	L	W	L	G	E	R	I	T	E	K	G
Template Known Secondary structure		S	S		S			T	T																																		S	S								S	S																									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.									.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.
Query Sequence		L	I	A	V	Q	Q	A	T	K	P	F	L	R	A	A	G	S	V	V	A	W	Y	F	D	F	G	F	A	G	F	V	I	A	W	Y	V	S	N	L	V	G	G	T	M	Y	W	W	F	A	A	R	E	L	R	R	R	N	I	H	N	A	F	K	L	N	L	F	E	S	A	R	.	.	.	.	.	.	.	.	Y
Query Conservation																																																																									.	.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	N	G	I	S	I	L	I	F	A	G	I	V	A	R	Y	P	S	Y	I	R	Q	A	Y	L	G	G	L	N	L	L	E	W	I	F	L	I	A	V	A	L	I	T	I	F	G	I	I	L	V	Q	Q	A	E	R	R	I	T	I	Q	Y	A	R	R	V	T	G	R	R	V	Y	G	G	A	S	T	Y	L	P
Template Known Secondary structure			T	T														S	T	T	S	S	S			S	S			S		T																		T	T	T											B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																				.	.	.																																					.	.	.	.	.	.	.
Query SS confidence																																				.	.	.																																					.	.	.	.	.	.	.
Query Sequence		I	K	G	A	W	S	F	V	W	S	T	N	I	A	H	S	I	W	S	A	R	N	S	C	S	T	V	L	V	G	I	V	L	G	.	.	.	P	A	A	A	G	L	F	K	I	A	M	T	F	F	D	A	A	G	T	P	A	G	L	L	G	K	S	F	Y	P	E	V	M	R	L	D	.	.	.	.	.	.	.
Query Conservation																																				.	.	.																																					.	.	.	.	.	.	.
Alig confidence																																				.	.	.																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	V	N	Q	G	G	V	I	P	I	I	F	A	S	A	I	V	S	I	P	S	A	I	A	S	I	T	N	N	E	T	L	K	N	L	F	R	A	G	G	F	L	Y	L	L	I	Y	G	L	L	V	F	F	F	T	Y	F	Y	S	V	V	I	F	D	P	R	E	I	S	E	N	I	R	K	Y	G	G	Y	I
Template Known Secondary structure									S	S																T	T	S	S	T	T							S	S	T	T																					T		T	T						T	T	S							S	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
					305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	P	R	T	T	R	P	W	L	L	G	V	K	S	G	L	L	A	G	G	I	G	I	L	V	A	L	A	V	L	I	V	G	K	P	L
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		P	G	L	R	P	G	R	S	T	E	Q	Y	L	H	R	V	L	N	R	V	T	F	I	G	A	V	F	L	V	V	I	A	L	L	P	Y	L	V
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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