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Job DescriptionP39377
Confidence100.00%DateThu Jan 5 12:00:10 GMT 2012
Rank27Aligned Residues343
% Identity18%Templatec3lnpA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:amidohydrolase family protein olei01672_1_465; PDBTitle: crystal structure of amidohydrolase family protein2 olei01672_1_465 from oleispira antarctica
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.. .......30.........40.........50.........60.........70.........80
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Query Sequence  AAGFTLLQGAHLYAPED. . . . . RGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGP
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Template Sequence  AHADLRINSHWIIPIENTVSNILIDHCLLIKDGIILAIEPQSSCQ. IPATETLDLGQQVLXPGWVNAHGHAAXSLFRGLA
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S

S

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   17..20.........30.........40.........50.........60. ........70.........80.........90.....
 
   81..... ...90.........100.........110.........120.........130.....
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Query Sequence  TTRTPE. . . . . . . . . . . . . . . . . . . . . . . . . VALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTG
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Template Sequence  DDLPLXTWLQEHVWPAEAQHVDEHFVKQGTELAIAEXIQSGTTTFADXYF. . . . . . YPQQSGEAALAAGIRAVCFAPVLD
Template Known Secondary structure 
S

T
STT

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   102.......110.........120.........130.........140.........150. ........160.........170.....
 
   136...140.........150........ .160.........170.........180.........190.........200.......
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Query Sequence  AYHVPSRTITGSVEKDVAIIDRV. . . . . . . . IGVKCAISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKK
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Template Sequence  FPTNYAQNADEYIRKAIECNDRFNNHPXNEQGLVQIGFGPHAPYTVSDEPLKEITXLSDQLD. . . . . . XPVQIHLHETDF
Template Known Secondary structure  S

SS
SSS
GGGTT



TTTS
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S
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   176...180.........190.........200.........210.........220.........230....... ..240.........
 
   208.210.........220.........230.........240.........250.........260.........270.........280.. .
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Query Sequence  ALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTL. . . . S
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Template Sequence  EVSESLETFNKR. . . . . . . . . . . . . . . . . . . . PTQRLADIGFLNERVSCVHXTQVDDGDIKILQKTGASIIHCPESNLKL
Template Known Secondary structure  SS
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STT

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   250.........260. ........270.........280.........290.........300.........
 
   284.....290.........300......... 310.........320.........330.........340..... ....
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Query Sequence  SDGNGSQPFFDDEGNLTHIGVAGFET. . . . . . . . . . . . . LLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGK. GEIL
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Template Sequence  ASGFCPIAKLSAANIPLAIGTDGAASNNDLDXFSETKTAALLAKGVSQDASAIPAIEALTXATLGGARALGIDDITGSLK
Template Known Secondary structure  T




TT





TTSS



T
TTSS
TTT
TTTSSS

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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   350.........360.. .......370.........380.
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Query Sequence  PGNDADLLVMTPE. . . . . . . . . . . . . . . . . . . . LRIEQVYARGKLMVKDGKA
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Template Sequence  PGKAADIQAIDLNTLSSQPVFDPVSHXVYCTKSTQVSHVWVNGRCLLKNGEL
Template Known Secondary structure  TTSB



SGGG
S
S
S

GGGTTTT
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   390.........400.........410.........420.........430.........440.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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