Job Description P07650 Confidence 100.00% Date Wed Jan 25 15:20:12 GMT 2012 Rank 5 Aligned Residues 433 % Identity 41% Template c3h5qA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus Resolution 1.94 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	A	Q	E	I	I	R	K	K	R	D	G	H	A	L	S	D	E	E	I	R	F	F	I	N	G	I	R	D	N	T	I	S	E	G	Q	I	A	A	L	A	M	T	I	F	F	H	D	M	T	M	P	E	R	V	S	L	T	M	A	M	R	D	S	G	T	V	L	D	W	K	S	L	H	L	N	G	P	I
Query Conservation
Alig confidence																																																																											.	.
Template Conservation																																																																											.	.
Template Sequence		X	R	X	I	D	I	I	E	K	K	R	D	G	H	T	L	T	T	E	E	I	N	F	F	I	G	G	Y	V	K	G	D	I	P	D	Y	Q	A	S	S	L	A	X	A	I	Y	F	Q	D	X	N	D	D	E	R	V	A	L	T	X	A	X	V	N	S	G	D	X	I	D	L	S	D	.	.	I	K	G	V	K
Template Known Secondary structure													T	T																		T	S	S																															T	T	S						T	T	.	.	S		S
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	K	H	S	T	G	G	V	G	D	V	T	S	L	M	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I	P	G	F	D	I	F	P	D	D	N	R	F	R	E	I	I	K	D	V	G	V	A	I	I	G	Q	T	S	S	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	K	H	S	T	G	G	V	G	D	T	T	T	L	V	L	A	P	L	V	A	A	V	D	V	P	V	A	K	X	S	G	R	G	L	G	H	T	G	G	T	I	D	K	L	E	A	I	D	G	F	H	V	E	I	D	E	A	T	F	V	K	L	V	N	E	N	K	V	A	V	V	G	Q	S	G	N	L	T
Template Known Secondary structure										T	T														T	T											S	S	S	S								T	T	S	T	T																		S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	K	R	F	Y	A	T	R	D	I	T	A	T	V	D	S	I	P	L	I	T	A	S	I	L	A	K	K	L	A	E	G	L	D	A	L	V	M	D	V	K	V	G	S	G	A	F	M	P	T	Y	E	L	S	E	A	L	A	E	A	I	V	G	V	A	N	G	A	G	V	R	T	T	A	L	L	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	D	K	K	L	Y	A	L	R	D	V	T	G	T	V	N	S	I	P	L	I	A	S	S	I	X	S	K	K	I	A	A	G	A	D	A	I	V	L	D	V	K	T	G	S	G	A	F	X	K	T	L	E	D	A	E	A	L	A	H	A	X	V	R	I	G	N	N	V	G	R	N	T	X	A	I	I	S	D
Template Known Secondary structure													T	T	T		S	S																T	T		S									S	T	T	S	S	B		S																			T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	Q	V	L	A	S	S	A	G	N	A	V	E	V	R	E	A	V	Q	F	L	T	G	E	Y	R	N	P	R	L	F	D	V	T	M	A	L	C	V	E	M	L	I	S	G	K	L	A	K	D	D	A	E	A	R	A	K	L	Q	A	V	L	D	N	G	K	A	A	E	V	F	G	R	M	V	A	A	Q	K
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		X	N	Q	P	L	G	R	A	I	G	N	A	L	E	L	Q	E	A	I	D	T	L	K	G	Q	.	G	P	K	D	L	T	E	L	V	L	T	L	G	S	Q	X	V	V	L	A	N	K	A	E	T	L	E	E	A	R	A	L	L	I	E	A	I	N	S	G	A	A	L	E	K	F	K	T	F	I	K	N	Q	G
Template Known Secondary structure			S	S		S	S	S				S												T	T		.	S																			T	T	S		S	S														T	S													T	T
Template Predicted Secondary structure																											.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	T	D	F	V	E	N	Y	A	K	Y	L	P	T	A	M	L	T	K	A	V	Y	A	D	T	E	G	F	V	S	E	M	D	T	R	A	L	G	M	A	V	V	A	M	G	G	G	R	R	Q	A	S	D	T	I	D	Y	S	V	G	F	T	D	M	A	R	L	G	D	Q	V	D	G	Q	R	P	L	A	V
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		G	D	E	T	V	I	D	H	P	E	R	.	L	P	Q	A	Q	Y	Q	I	E	Y	K	A	K	K	S	G	Y	V	T	E	L	V	S	N	D	I	G	V	A	S	X	X	L	G	A	G	R	L	T	K	E	D	D	I	D	L	A	V	G	I	V	L	N	K	K	I	G	D	K	V	E	E	G	E	S	L	L	T
Template Known Secondary structure				T						G	G	G	.	S				S								S	S																			T	T	T	S		S	S	T	T					T	T						S			T	T					T	T	S
Template Predicted Secondary structure													.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	A	K	D	E	N	N	W	Q	E	A	A	K	A	V	K	A	A	I	K	L	A	D	K	A	P	E	S	T	P	T	V	Y	R	R	I	S	E
Query Conservation
Alig confidence									.																					.
Template Conservation									.																					.
Template Sequence		I	H	S	N	R	Q	D	.	V	D	D	V	V	K	K	L	D	S	S	I	T	I	A	D	H	V	V	S	.	P	T	L	I	H	K	I	I	T	E
Template Known Secondary structure					S	S	S		.																S					.			S
Template Predicted Secondary structure									.																					.
Template SS confidence
		397	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.