Job Description P07650 Confidence 39.27% Date Wed Jan 25 15:20:12 GMT 2012 Rank 109 Aligned Residues 126 % Identity 10% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.									.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.																					.	.	.	.	.	.	.	.								.	.
Query SS confidence																												.	.	.	.																					.	.	.	.	.	.	.	.								.	.
Query Sequence		L	A	Q	E	I	I	R	K	K	R	D	G	H	A	L	S	D	E	E	I	R	F	F	I	N	G	.	.	.	.	I	R	D	N	T	I	S	E	G	Q	I	A	A	L	A	M	T	I	F	F	.	.	.	.	.	.	.	.	H	D	M	T	M	P	E	.	.	R	V	S	L	T	M	A	M	R	D	S	G	T
Query Conservation																												.	.	.	.																					.	.	.	.	.	.	.	.								.	.
Alig confidence																												.	.	.	.																					.	.	.	.	.	.	.	.								.	.
Template Conservation
Template Sequence		K	I	T	S	A	L	R	S	L	S	N	A	T	I	I	N	E	E	V	L	N	A	M	L	K	E	V	C	T	A	L	L	E	A	D	V	N	I	K	L	V	K	Q	L	R	E	N	V	K	S	A	I	D	L	E	E	M	A	S	G	L	N	K	R	K	M	I	Q	H	A	V	F	K	E	L	V	K	L	V	D
Template Known Secondary structure		T	T	T	T	T	T	T				S		S	S																				T	T	T	S	S	S	T	T												T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		V	L	D	W	K	S	L	H	L	N	G	P	I	V	D	K	H	S	T	G	G	V	G	D	V	T	S	L	M	.	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I
Query Conservation																															.
Alig confidence																															.																	.	.
Template Conservation																																																.	.
Template Sequence		P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	.	.	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N
Template Known Secondary structure											S	S								S	T	T	S	S															T	T								.	.				S	S	S
Template Predicted Secondary structure																																																.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions