Job Description P07650 Confidence 46.60% Date Wed Jan 25 15:20:12 GMT 2012 Rank 94 Aligned Residues 173 % Identity 12% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																				.	.	.	.	.	.	.	.									.	.
Query SS confidence																											.	.	.	.																				.	.	.	.	.	.	.	.									.	.
Query Sequence		A	Q	E	I	I	R	K	K	R	D	G	H	A	L	S	D	E	E	I	R	F	F	I	N	G	.	.	.	.	I	R	D	N	T	I	S	E	G	Q	I	A	A	L	A	M	T	I	F	.	.	.	.	.	.	.	.	F	H	D	M	T	M	P	E	.	.	R	V	S	L	T	M	A	M	R	D	S	G	T	V
Query Conservation																											.	.	.	.																				.	.	.	.	.	.	.	.									.	.
Alig confidence																											.	.	.	.																				.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		L	Q	E	A	I	G	R	L	R	G	R	G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G
Template Known Secondary structure									T	T	T	S		S																			T	T	T																				T	T	T	T	T		S																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.						.	.	.	.	.
Predicted Secondary structure																														.																															.	.	.	.								.	.	.	.	.
Query SS confidence																														.																															.	.	.	.								.	.	.	.	.
Query Sequence		L	D	W	K	S	L	H	L	N	G	P	I	V	D	K	H	S	T	G	G	V	G	D	V	T	S	L	M	.	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	.	.	.	.	E	S	I	P	G	F	D	.	.	.	.	.	I	F	P	D	D
Query Conservation																														.																															.	.	.	.								.	.	.	.	.
Alig confidence																														.																	.	.													.	.	.	.				.				.	.	.	.	.
Template Conservation																																															.	.																				.
Template Sequence		E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	.	.	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	.	G	V	P	V	L	E	V	M	D	G	E	S	P
Template Known Secondary structure		S								S	S									T	T	S	S															T	T								.	.			S	S																.	T								T	T
Template Predicted Secondary structure																																															.	.																				.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.
		140	.	.	.	.	.							.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence		N	R	F	R	E	I	.	.	.	.	.	.	I	K	D	V	G	V	A	I	I	G	Q	T	S	S	L	A	P	A	D	K	R	F	Y	A	T	R	D	I	T	A	T	V	D	S
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P
Template Known Secondary structure																T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions