Job Description P07650 Confidence 100.00% Date Wed Jan 25 15:20:12 GMT 2012 Rank 4 Aligned Residues 423 % Identity 40% Template c2dsjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	A	Q	E	I	I	R	K	K	R	D	G	H	A	L	S	D	E	E	I	R	F	F	I	N	G	I	R	D	N	T	I	S	E	G	Q	I	A	A	L	A	M	T	I	F	F	H	D	M	T	M	P	E	R	V	S	L	T	M	A	M	R	D	S	G	T	V	L	D	W	K	S	L	H	L	N	G	P	I
Query Conservation
Alig confidence																																																																											.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		M	N	P	V	A	F	I	R	E	K	R	E	G	K	K	H	R	R	E	D	L	E	A	F	L	L	G	Y	L	R	D	E	V	P	D	Y	Q	V	S	A	W	L	M	A	A	F	L	R	G	L	D	P	E	E	T	L	W	L	T	E	T	M	A	R	S	G	K	V	L	D	L	S	G	.	.	.	L	P	H	P
Template Known Secondary structure													T	T																	T	T		S																															T	S	S	B					T	T	.	.	.	S	S	S	B
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	K	H	S	T	G	G	V	G	D	V	T	S	L	M	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I	P	G	F	D	I	F	P	D	D	N	R	F	R	E	I	I	K	D	V	G	V	A	I	I	G	Q	T	S	S	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	K	H	S	S	G	G	V	G	D	K	V	S	L	V	V	G	P	I	L	A	A	S	G	C	T	F	A	K	M	S	G	R	G	L	A	H	T	G	G	T	I	D	K	L	E	S	V	P	G	W	R	G	E	M	T	E	A	E	F	L	E	R	A	R	R	V	G	L	V	I	A	A	Q	S	P	D	L	A
Template Known Secondary structure								S	S	S			S	T										T	T	T		B									B	T	T	B								T	T	S	T	T																	T	S					S		G	G	G	B	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	K	R	F	Y	A	T	R	D	I	T	A	T	V	D	S	I	P	L	I	T	A	S	I	L	A	K	K	L	A	E	G	L	D	A	L	V	M	D	V	K	V	G	S	G	A	F	M	P	T	Y	E	L	S	E	A	L	A	E	A	I	V	G	V	A	N	G	A	G	V	R	T	T	A	L	L	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	D	G	K	L	Y	A	L	R	D	V	T	A	T	V	E	S	V	P	L	I	A	S	S	I	M	S	K	K	L	A	A	G	A	R	S	I	V	L	D	V	K	V	G	R	G	A	F	M	K	T	L	E	E	A	R	L	L	A	K	T	M	V	A	I	G	Q	G	A	G	R	R	V	R	A	L	L	T	S
Template Known Secondary structure													T	T	T																				T		S									S	S	S	T	T		B																			T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	Q	V	L	A	S	S	A	G	N	A	V	E	V	R	E	A	V	Q	F	L	T	G	E	Y	R	N	P	R	L	F	D	V	T	M	A	L	C	V	E	M	L	I	S	G	K	L	A	K	D	D	A	E	A	R	A	K	L	Q	A	V	L	D	N	G	K	A	A	E	V	F	G	R	M	V	A	A	Q	K
Query Conservation
Alig confidence																											.																									.	.	.	.	.	.
Template Conservation																											.																									.	.	.	.	.	.
Template Sequence		M	E	A	P	L	G	R	A	V	G	N	A	I	E	V	R	E	A	I	E	A	L	K	G	E	.	G	P	G	D	L	L	E	V	A	L	A	L	A	E	E	A	L	R	L	E	G	L	D	P	.	.	.	.	.	.	A	L	A	R	K	A	L	E	G	G	A	A	L	E	K	F	R	A	F	L	E	A	Q	G
Template Known Secondary structure			S	S		S	S	S				S												T	T		.	S																			T	T			T	.	.	.	.	.	.									T	S													T	T
Template Predicted Secondary structure																											.																									.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.							.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	T	D	F	V	E	N	Y	A	K	Y	L	P	T	A	M	L	T	K	A	V	Y	A	D	T	E	G	F	V	S	E	M	D	T	R	A	L	G	M	A	V	V	A	M	G	G	G	R	R	Q	A	S	D	T	I	D	Y	S	V	G	F	T	D	M	A	R	L	G	D	Q	V	D	G	Q	R	P	L	A	V
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		G	D	P	R	A	V	E	D	F	S	.	.	L	L	P	L	A	E	E	H	P	L	R	A	E	R	E	G	V	V	R	E	V	D	A	Y	K	V	G	L	A	V	L	A	L	G	G	G	R	K	R	K	G	E	P	I	D	H	G	V	G	V	Y	L	L	K	K	P	G	D	R	V	E	R	G	E	A	L	A	L
Template Known Secondary structure				G	G	G	G	T		G	G	.	.	G	S											S	S																				T	S	S		S	S	T	T					T	T						S			T	T					T	T	S
Template Predicted Secondary structure												.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	A	K	D	E	N	N	W	Q	E	A	A	K	A	V	K	A	A	I	K	L	A	D	K	A	P	E	S	T	P	T	V	Y	R	R	I
Query Conservation
Alig confidence									.																					.
Template Conservation									.																					.
Template Sequence		V	Y	H	R	R	R	G	.	L	E	E	A	L	G	H	L	R	E	A	Y	A	L	G	E	E	A	H	P	.	A	P	L	V	L	E	A	I
Template Known Secondary structure						S	S	S	.																S					.			S
Template Predicted Secondary structure									.																					.
Template SS confidence
		389	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.